Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00995
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 111 8e-26
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 111 8e-26
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 37 0.002
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 1.8
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.2
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 25 9.5
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 111 bits (266), Expect = 8e-26
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +1
Query: 7 IQAVQVFGRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 186
+Q+VQ FG+K ATAVA+ K G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 187 DIRVTVKGGGHVAQVYAIRQAISR 258
DIRV V GGGHV+Q+YAIRQAIS+
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +3
Query: 255 KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 425
KA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 84 KAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 111 bits (266), Expect = 8e-26
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +1
Query: 7 IQAVQVFGRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 186
+Q+VQ FG+K ATAVA+ K G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 187 DIRVTVKGGGHVAQVYAIRQAISR 258
DIRV V GGGHV+Q+YAIRQAIS+
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +3
Query: 255 KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 425
KA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 84 KAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +1
Query: 28 GRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 207
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 208 GGGHVAQVYAIRQAISR 258
GGG Q A+ AIS+
Sbjct: 71 GGGPTGQSGAVHAAISK 87
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 406 DTRNLTVKPSTKPSGGIVAAVCCH 477
D N+ VKP+ P+ + +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 246 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 157
LS+ N CYM + L C + + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 94 RLHAAFHDHACNTQLRWRFS 35
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 282 ISGRRRSEP*NSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKDRFLKFVLQQSGLNQ 109
ISG+++ EP S +DS+ T+D + E +A + + +F Q S L+Q
Sbjct: 337 ISGKKKEEPMESGTDSLESSTAQITVDSQLKIKQLETQIATLQKQLEQF--QTSTLDQ 392
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 133 TAAVWAQPSPMDARLHAAFHDHACNTQLR 47
T +V + P AR AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 129 QQSGLNQVQWTPVYTQHSMTTLVIRNCGGGFLTSEYLDGLD 7
Q +G Q+ W V T L + N ++YLD +D
Sbjct: 29 QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVD 69
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 252 FKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 389
F + + ++DEA+ K+I + Y +LL P P K GG
Sbjct: 216 FSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,705
Number of Sequences: 5004
Number of extensions: 40602
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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