Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00995
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 109 1e-24
11_01_0155 - 1287003-1287452 109 1e-24
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 36 0.015
03_06_0097 - 31632238-31632525,31633386-31633769 35 0.047
07_03_0227 - 15398371-15398925 29 1.8
06_03_0062 + 16116893-16117029,16117472-16117760 29 1.8
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.3
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.4
01_06_0683 - 31173763-31174635,31175146-31175436 28 5.4
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 5.4
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 27 7.2
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 27 7.2
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.2
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 9.5
>12_01_0152 - 1168928-1169377
Length = 149
Score = 109 bits (262), Expect = 1e-24
Identities = 48/57 (84%), Positives = 54/57 (94%)
Frame = +3
Query: 255 KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 425
KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 93 KALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 103 bits (247), Expect = 9e-23
Identities = 45/85 (52%), Positives = 64/85 (75%)
Frame = +1
Query: 4 PIQAVQVFGRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 183
P VQ FGRKKTA AV+Y K G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKD 68
Query: 184 VDIRVTVKGGGHVAQVYAIRQAISR 258
+D+R+ V+GGG +Q+YAIRQAI++
Sbjct: 69 IDMRIRVRGGGKTSQIYAIRQAIAK 93
>11_01_0155 - 1287003-1287452
Length = 149
Score = 109 bits (262), Expect = 1e-24
Identities = 48/57 (84%), Positives = 54/57 (94%)
Frame = +3
Query: 255 KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 425
KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 93 KALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 103 bits (247), Expect = 9e-23
Identities = 45/85 (52%), Positives = 64/85 (75%)
Frame = +1
Query: 4 PIQAVQVFGRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 183
P VQ FGRKKTA AV+Y K G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKD 68
Query: 184 VDIRVTVKGGGHVAQVYAIRQAISR 258
+D+R+ V+GGG +Q+YAIRQAI++
Sbjct: 69 IDMRIRVRGGGKTSQIYAIRQAIAK 93
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 36.3 bits (80), Expect = 0.015
Identities = 25/77 (32%), Positives = 36/77 (46%)
Frame = +1
Query: 28 GRKKTATAVAYYKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 207
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 208 GGGHVAQVYAIRQAISR 258
GGG QV AIR ISR
Sbjct: 354 GGGVSGQVGAIRLGISR 370
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 34.7 bits (76), Expect = 0.047
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +1
Query: 10 QAVQVFGRKKTATAVAYYKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 180
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 181 MVDIRVTVKGGGHVAQVYAIRQAISR 258
D+ V V GGG Q AI ++R
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVAR 178
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 148 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 38
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 103 MDARLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 5
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 122 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 220
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 91 NGRPLDLVEPRLLQYKLQEPILLL 162
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 5 PSRPSKYSDVRKPPPQLRITSVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLW 184
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 185 ST 190
T
Sbjct: 276 RT 277
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 102 WTPVYTQHSMTTLVIRNCGGGFLTSEYLD 16
W V T H +T +V R+C G F ++LD
Sbjct: 18 WNYVVTAHKLT-VVARSCVGNFTAPDHLD 45
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +3
Query: 171 KILYGRH--QSDSQGWWSC---STSLRYQTSYFKALIAFYQKYVDEASKKEIKDI--LVQ 329
KI Y + QS + WW S S R ++ AFY+KY E+ K+ K+ L Q
Sbjct: 15 KITYATYMLQSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQ 74
Query: 330 YDRSLLVADPRRCEPKKFGGPGARAR 407
+ + + R P+ G++AR
Sbjct: 75 VEYEIEFSRLARFAPEFVQTDGSKAR 100
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 2 SPSRPSKYSDVRKPPPQLRITS 67
S S P K SD R PPP+ R TS
Sbjct: 37 SRSPPPKKSDSRSPPPRRRSTS 58
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 444 WFR*RLNGKISGIWHGH 394
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 199 TVKGGGHVAQVYAIRQAISRL 261
TVKGGGH A Y +Q ++ L
Sbjct: 403 TVKGGGHTAPEYMPKQCLAML 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,888
Number of Sequences: 37544
Number of extensions: 308050
Number of successful extensions: 819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -