Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00994X
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132...    27   4.0  
03_01_0283 + 2193632-2195182                                           27   4.0  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    27   5.3  
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    27   5.3  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    26   9.3  
03_01_0271 + 2097027-2098583                                           26   9.3  

>04_03_0558 +
           17111138-17111996,17112474-17112564,17112647-17113268,
           17113378-17113457,17113871-17113937,17114138-17114263,
           17114333-17114415,17115334-17115777,17115834-17115927,
           17116038-17116124,17116474-17116594,17116671-17116709,
           17116828-17116997
          Length = 960

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 199 FDNLFVIKDLITRREGKCHFVTFGSMCIVTYLKPTSYISDYTTECQ 62
           FD + +      R E  C  +TFG   I    KP      +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635


>03_01_0283 + 2193632-2195182
          Length = 516

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 95  RRLQVRNYAHAPKGDEMAFTFSA-GNKVF 178
           R +   N+A+ PKGDE A  F   GN +F
Sbjct: 89  RHIFTSNFANYPKGDEYAEIFDVLGNGIF 117


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 173 PYYPQRR*MPFRHLWEHVHSYV 108
           P+ P+ + +P  HLW H+  +V
Sbjct: 308 PFGPRDKYIPKEHLWPHIQEFV 329


>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 96  VGFKYVTMHMLPKVTKWHLPSLRVIRSFMT 185
           + +KY+TM +     +W  PS+R + +F T
Sbjct: 166 LAYKYITMGIPQWFPRWAQPSMRYVVTFTT 195


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 FKYVTMHMLPKVTKWHLPSL 161
           F+  T H LP++ KW  PSL
Sbjct: 756 FRMSTNHFLPQLPKWIKPSL 775


>03_01_0271 + 2097027-2098583
          Length = 518

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  RRLQVRNYAHAPKGDEMAFTFSAGNKVFYD 184
           R + + N+A+ PKG+E A  F      F++
Sbjct: 95  RHIFINNFANYPKGEEFASFFDVMGDSFFN 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,748
Number of Sequences: 37544
Number of extensions: 121562
Number of successful extensions: 246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)