Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00992
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 29 0.72
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.7
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 28 1.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.9
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.9
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.1
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 26 5.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.7
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 6.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 8.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 8.9
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 262 VKTVRSLVDNQGSDVCRDVVSQLVSHGIKNAMSFAYKLWH 381
+K R ++++ SD+C DV+S L H I A + K+++
Sbjct: 83 IKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 380 TRATRTSSKITSRANSNSYSTKRELNSSANIT 475
T AT TSS ++S A SNS ++ +SS N T
Sbjct: 204 TSATATSSSLSSTAASNSATSSSLASSSLNST 235
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 362 SRTSCGTRATRTSSKITSRANSNSYSTKRELNSSANIT 475
S TS ++ TSS ++S A SNS ++ +SS N T
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +2
Query: 386 ATRTSSKITSRANSNSYSTKRELNSS---ANITIKLSNWMLTLTVQRPPNLGRRKRLHQL 556
A ++T N S T++ SS N+ + L V P L RK++ +
Sbjct: 320 AENIDEELTRYKNDASEITRKSGVSSLEEVNVDAFADSTYLKSAVSLLPELTARKQILDM 379
Query: 557 PSQLATHLSLGKQQRHLQD 613
+AT L Q+RHL D
Sbjct: 380 HMNIATALLKAIQERHLDD 398
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 380 TRATRTSSKIT-SRANSNSYSTKRELNSSANITIKLS 487
TR+ +T S + SRA+SN++ ++ N S+N+T +S
Sbjct: 4 TRSEKTLSFLNPSRASSNTHLSREGTNRSSNVTRTVS 40
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +2
Query: 434 YSTKRELNSSANITIKLSNWMLTLTVQRPPNLGRRKRLHQLPSQLATHLSLGKQQRHLQD 613
YST E + S +T LS W+ + + P L R ++ +P +L+ + + D
Sbjct: 89 YSTADEADESFEMTALLSGWL--IESKSPWILSRPNQVEAVPIKLSNKNGQSASKNKILD 146
Query: 614 TEHRTRDVLETGRERGQLRRQEDL 685
++ L +G + +L +++L
Sbjct: 147 FLKSDKENLISGDDDQELIDEDEL 170
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 5.1
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 437 STKRELNSSANITIKLSNWMLTLTVQRPP-NLGRRKRLHQLPSQLATHLSLGKQQRHLQD 613
ST+ NSS TI+LS+ L + P + +RL + TH S Q+H++
Sbjct: 221 STQGSFNSSR--TIELSSVTLPKSEDEPYLDYSAARRLCSINKDALTHRSHESLQQHIEL 278
Query: 614 TEHRTRDVLETGR 652
E + +E R
Sbjct: 279 LESTLQQAVEVAR 291
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 274 RSLVDNQGSDVCRDVVSQLVSHGIKNAMSFA 366
+ L N SDV + +++++ HG K A ++
Sbjct: 320 KELSSNLVSDVAKKIINEVTGHGYKEAREYS 350
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 322 SQLVSHGIKNAMSFAYKLWHEGHKDIVEDYF 414
++LVSH + A ++ WHEG ++ YF
Sbjct: 1811 ARLVSHELIRAAILWHEQWHEGLEEASRLYF 1841
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 418 SEFQLILDQKRIKLIGKHYNQALKLDANVDRTTTA*PGETEKTTPATESAGDSSLFGKTT 597
S +++D R+KL+ K Y L + A P E TP+ + S+ F T
Sbjct: 20 SRVSMLVD--RVKLLWKRYTTPLSTEDGSREAHFAVPSENYADTPSRNTPNSSNGFPSET 77
Query: 598 TSSS 609
+S
Sbjct: 78 LVTS 81
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 576 ISLWENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGSNDSSEKRHTWYLY 731
ISL +V + L + E+ L L++ ++ YG K W S D S ++ LY
Sbjct: 109 ISLKSEKDVFLQGLLSMDEIELLLEIFIERYG--KRWLSVDYSASQYMELLY 158
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 587 GKQQRHLQDTEHRTRDVLETGRERGQLRRQ 676
GK Q HL+ E RD+ E E LR +
Sbjct: 384 GKLQAHLEKFEQTERDISEKNEEVKSLREK 413
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -3
Query: 492 QFESLIVMFADEFNSLLVEYELEFAREVIFDDVLVALVPQLVRERHGVLDAMRDELRDDV 313
+ ES + +A+ L E ELE R +I D + +L+ E+ L M +E+R
Sbjct: 955 ELESHLSNYAEA--KLAQERELEQTRVLISDQSQDGELKELLEEKENALIMMEEEMRQVN 1012
Query: 312 ATDVGALVVDETAHS 268
+ L V+ T S
Sbjct: 1013 DANTELLRVNATLKS 1027
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,336
Number of Sequences: 5004
Number of extensions: 57583
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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