Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00992
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423...    29   3.1  
06_01_0410 + 2928382-2930973                                           29   3.1  
08_02_0119 + 12782712-12783218                                         29   5.3  
02_05_1113 + 34207997-34208380                                         29   5.3  
01_01_0888 + 6990354-6991862,6991970-6992431                           28   7.1  
11_06_0514 - 24477720-24479915                                         28   9.3  
03_06_0754 - 36025579-36027000                                         28   9.3  

>06_03_1068 -
           27341103-27341444,27341689-27341929,27342030-27342343,
           27342672-27343805
          Length = 676

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
 Frame = +1

Query: 175 IQHEEGLCRRKFNQQSLVQLGYGRRLHNAVKTVRSLVDNQGSDVCRDVVSQLVSHGIKNA 354
           ++H+    RRKF + +L  LG G  L   +   R+L + QG    R   S+ + +  K+ 
Sbjct: 35  LEHKTNDARRKFLKLALGNLGVG--LPTLLGAKRALAEEQGVSSSRMSYSRFLEYLDKDR 92

Query: 355 MSFAYKLWHEGHKDIVEDYFPSEFQLILDQKRIKLIGKHYNQALKL-DANVD 507
           +     L+  G   IVE   P E    + + R++L G       KL + N+D
Sbjct: 93  VK-KVDLFENGTIAIVEAISP-ELGNRVQRVRVQLPGLSQELLQKLREKNID 142


>06_01_0410 + 2928382-2930973
          Length = 863

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 211 NQQSLVQLGYGRRLHNAVKTVRSLVDNQGSDVCRDVVSQLV 333
           N   L +LG G  +  ++K    LVD+ G D+  D  ++L+
Sbjct: 279 NHVDLAKLGMGTTIECSMKGKNQLVDDDGKDMANDERTELI 319


>08_02_0119 + 12782712-12783218
          Length = 168

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 484 LKLDANVDRTTTA*PGETEKTTPATESAGDSS 579
           +KLDA+V  T+++  GE ++ +  T  +GD S
Sbjct: 14  MKLDADVAATSSSKDGEVQQVSDGTAQSGDKS 45


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 WSRVRTARRLEDPDGIQHEEGLCRR 204
           W R RTARR    DG   EEG C R
Sbjct: 45  WRRSRTARRTPVADGDGSEEGGCGR 69


>01_01_0888 + 6990354-6991862,6991970-6992431
          Length = 656

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 551 QLPSQLATHLSLGKQQRHLQDTEHRTRD 634
           +L  Q+ THL  G+QQ+  Q  E R +D
Sbjct: 131 KLEKQITTHLRGGRQQQQQQQPEQRRQD 158


>11_06_0514 - 24477720-24479915
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 356 CRSRTSCGTRATRTSSKITSRANSNSYST---KRELNSSANITIKLSNWMLTLTVQRP 520
           C S + C  R    SS   +  N + + T   +R+ ++   ++ ++SN+ML L V RP
Sbjct: 527 CSSSSKC-LRCLCVSSSAPAGNNDDDHGTTARERDPDNLVTVSREISNYMLFLLVMRP 583


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 542 RLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRER 658
           R H++  Q+A   +L      L D EH  R +L+T   R
Sbjct: 145 RAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQTSSSR 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,562
Number of Sequences: 37544
Number of extensions: 396710
Number of successful extensions: 1300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)