Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00991
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.65 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.86 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 402 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 509
           +DT+   K KI  K  I PD + L+   KQ E G T
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVT 766



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 175 SDTIENVKAKIQDKEGIPPDQQRLI 249
           +DT+   K KI  K  I PD + L+
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLV 756


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 457 LINSVSSLLASSWKTDALVRLQHSKRIHTPSCTASSW 567
           L+ ++   + + +  D  + LQ  K+ HTP+    +W
Sbjct: 767 LVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTW 803


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 211 DKEGIPPDQQRLIFAASSWKTD 276
           D E  P D+QR +   +SW  D
Sbjct: 134 DVEFFPFDEQRCVLKWASWTYD 155


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 467 LLIRRNSFFVLDLRLHILNC 408
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 240 LLIRRNSFFVLDLRLHILNC 181
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,641
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)