Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00990
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.16 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.5  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.3  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   5.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   7.7  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.7  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +2

Query: 443 CDSGTIYNNQTGTHESACECCQPRSTAACPCDSRAKTGRSDRTGSPTPAR-CHCAACG 613
           C  G+I  N   T   A EC +P+    C     A     D   SP P +   C  CG
Sbjct: 32  CTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCG 89


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 448  LWNYL*QPDRYARVCVRVLSAAKYSGVSVRLTCEDGTVR 564
            L+N    P  Y  +C+ +   A Y G++  L C +  ++
Sbjct: 1107 LFNNYADPLGYGEICLSIFQCADYRGINEILNCWESIIK 1145


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/77 (24%), Positives = 26/77 (33%)
 Frame = +2

Query: 452 GTIYNNQTGTHESACECCQPRSTAACPCDSRAKTGRSDRTGSPTPARCHCAACGPGLTKH 631
           GT      G  +SA E   P  T+A   +S+   G    T  P+P            T  
Sbjct: 525 GTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTK 584

Query: 632 PKPGHASYSGTKNPVQP 682
           P P  A+        +P
Sbjct: 585 PTPVSATEEHAAGTTKP 601


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 536 DSRAKTGRSDRTGSPTPARCHCAACGPGLTKHPKP 640
           ++ AK  R  R G     + HC+ CG  L   P P
Sbjct: 320 EAEAKARRDKRLGELLTGK-HCSECGTPLYSDPSP 353


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 RGGGVRDVSHRALPRRVGLHPADIVNTTCCQICNEK 304
           R GG+ ++   A  +R+   P D  +T   Q+C E+
Sbjct: 495 RFGGLENLHQIAFEKRMPFFPIDYPDTISGQLCEEE 530


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 280 GSIDNVGRVQADTSGQCSVADVTNTSSPLRSQLNV 176
           G ++    + AD S      D +N  SP+ SQL +
Sbjct: 33  GKVEATEFIPADVSDSTQTVDRSNKISPITSQLTI 67


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 196 LRSQLNVVQLSAEDHVEPGSLS 131
           L+SQ+  VQ S E H++PG L+
Sbjct: 623 LQSQMEHVQNSNEQHLQPGLLN 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,607
Number of Sequences: 5004
Number of extensions: 53760
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)