Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00990
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0798 + 20649370-20649428,20649515-20649719 34 0.12
05_06_0006 - 24817270-24817941,24818637-24818848,24819261-248194... 34 0.12
09_06_0096 - 20840855-20841994 31 0.64
03_05_1131 - 30606808-30607042,30607141-30607664 31 0.85
07_03_1221 + 24968710-24969123 30 1.5
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 30 1.5
11_03_0128 - 10437407-10438049,10438097-10438272 29 2.6
07_01_0212 + 1571631-1572149 29 2.6
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 29 2.6
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 29 2.6
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 29 3.4
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 29 4.5
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 29 4.5
08_01_0017 + 132109-132924 29 4.5
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 29 4.5
04_04_0692 - 27307349-27307728,27308381-27308546 29 4.5
04_03_0173 + 12248973-12249809 29 4.5
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 29 4.5
07_03_0113 - 13557496-13557960 28 6.0
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 6.0
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 6.0
08_02_0296 - 15466693-15466878,15467046-15467315 28 7.9
03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971,144... 28 7.9
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 28 7.9
01_01_0757 - 5840736-5842574 28 7.9
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Frame = +2
Query: 377 MGAHGLCVNKFPITGFTECHGSCDSGTIYNNQTGTHESACECCQPRSTAACPCDSRAK-T 553
MG C P G T C C S G + C C C C ++ T
Sbjct: 1 MGCDDKCGCAVPCPGGTGCR--CASSA---RSGGGDHTTCSCGDHCGCNPCRCGRESQPT 55
Query: 554 GRSDR-TGSPTPARCHCAACGPGLTKHP 634
GR +R G C CA+CG T P
Sbjct: 56 GRENRRAGCSCGDSCTCASCGSTTTTAP 83
>05_06_0006 -
24817270-24817941,24818637-24818848,24819261-24819446,
24820119-24820161
Length = 370
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 29 HCERQCRRGWTYSPPAADHCCGRCVSVRLPRRRPAQGTRLHVVLGRQLHHVQLRPKRGGG 208
H E CRR + ++ D C V LP PA+GT ++ L L+ KRGGG
Sbjct: 124 HDELDCRRNYVFNRSRDDPCDITPVCPTLPLISPARGTS---IIDGVLLEYSLKAKRGGG 180
>09_06_0096 - 20840855-20841994
Length = 379
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 340 PELRHCRSDPHPDGSPRPVRQQVPHH 417
P +R R PHPDG+P P VPHH
Sbjct: 306 PVVRRRRPTPHPDGAPPP----VPHH 327
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 295 QRETASPQ*MRP*EHPELRHCRSDPHPDGSPRPVRQQVPHHRLHGVPRLL 444
+R A+ P H R S P P +PRPVR V + ++G RLL
Sbjct: 11 KRHRAAAAAAAPASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRLL 60
>07_03_1221 + 24968710-24969123
Length = 137
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 VEHCERQCRRGWTY-SPPAADHCCGRCVSVRLPRR 124
V H RR Y PP HCC RC+++ RR
Sbjct: 69 VHHLVHLARRCPAYHKPPPTPHCCRRCLTLEHARR 103
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 447 SQEPWHSVKPVMGNLLTHR----PWAPIGMRIRPTVSELGML 334
+ +PW ++P++GN++ R W P +R + S+ G +
Sbjct: 299 TDDPWRDLQPIVGNIMIPRDGSKSWLPESLRAKKDTSDRGQV 340
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +2
Query: 182 QLRPKRGGGVRDVSHRA----LPRRVGLHPADIVNTTCCQICNEKPQALSKCVPKSIPSS 349
QL P G D HRA LPRR A +TTC C P + S C S SS
Sbjct: 107 QLCPAAGIHRPDDGHRARQRHLPRR-SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCSS 165
Query: 350 DT 355
T
Sbjct: 166 ST 167
>07_01_0212 + 1571631-1572149
Length = 172
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 682 RLYWVLGTRVGCVTRFRVLSESGSAGGTVAARRRWRPGAV 563
++ W T +GC T V+ E+G G V A W PG +
Sbjct: 130 QVVWYNSTDIGCAT---VVCETGDNTGVVVACNYWPPGNI 166
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 619 SGSAGGTVAARRRWRPGAVGPSRLRT 542
SGS GGT R RW G P L T
Sbjct: 7 SGSGGGTTPVRPRWGSGVTTPRSLST 32
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 292 DLTAGSIDNVGRVQADT-SGQCSVADVTNTSSPLRSQLNVVQLSAEDHVEPGSLS 131
D A + NV R D S CS + + +P+RS+LNV + + ++ S+S
Sbjct: 813 DTAASKLLNVVREDFDVRSSSCSTSTQPSGQTPVRSKLNVPETNLASNISIPSIS 867
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 330 GTHLLRACGFSLQI*QQVV---LTMSAGCRPTRRGSARWLTSRTPPP 199
G HL+R G S + +++S+G RP R AR L + +PPP
Sbjct: 36 GKHLVRLAGSSSLRGGAALSPAVSISSGSRPATRAGARALRAASPPP 82
>12_01_0639 +
5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 582 VGDPVRSDRPVFARESHGHAAVLRG*QHSHADSCVPVWLL*IVPESQEPW 433
+GD ++ + R G+ A L+G H + P WL + P++ E W
Sbjct: 775 LGDGEKAIVALDVRTGSGNNAELKGLSGEHVAAGWPAWLANVAPKAVEGW 824
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 146 LHVVLGRQLHHVQLRPKRGGGV 211
+H+V+G QLH + +R +R GV
Sbjct: 234 VHIVVGMQLHQLPVRARRAAGV 255
>08_01_0017 + 132109-132924
Length = 271
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 479 THESACECCQPR--STAACPCDSRAKTGRSDR 568
+H S C CC+ R S A+ D+ + RSDR
Sbjct: 96 SHSSTCSCCRSRTASDASASADAVTRALRSDR 127
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 596 HCAACGPGLTKHPKPGHASYSG 661
HC ACG GL KHP+ G SG
Sbjct: 358 HCYACGDGL-KHPEDGTLYESG 378
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 156 SSADNCTTFSCDRSGEEVFVTSATEHCPDVSACTRPTLSILPAVRSATRNRKPS 317
S D T + RSG F+ +T HC T ++ + TR KPS
Sbjct: 85 SYKDGTTIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPS 138
>04_03_0173 + 12248973-12249809
Length = 278
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 469 VVIDSSRVAGAVALREAGDGELVDAQAVGSHRDADQTYSV*ARDAL 332
+V+D + +L EA GE+V Q + + D + YS+ A+ AL
Sbjct: 66 LVVDDAAAGAITSLPEATQGEVVALQVLLDYYDPVKLYSLKAKTAL 111
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 141 PGSTWSSADNCTTFSCDRSGEEVFVTSATEHCPD-VSACTR 260
PG W + T R+G+E + S + PD V +C R
Sbjct: 451 PGRIWKRVNGWTDMPLSRAGKETMLKSVAQAIPDFVMSCFR 491
>07_03_0113 - 13557496-13557960
Length = 154
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 226 PSTAPTCRPAPGRHCQYY 279
P++AP+ PA RH QYY
Sbjct: 94 PASAPSAPPAQDRHAQYY 111
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Frame = +2
Query: 344 SSDTVGLIRIPMGAHGLCVNKFPITGFTE--CHGSCDSGTIYNNQTGT------------ 481
S +++ L+ P AH + GF E CH S N G
Sbjct: 224 SDESILLLHRPAAAHDKLLGGLLADGFDEGSCHSRYQSAMYRRNNAGKEPSPHLVSRLRR 283
Query: 482 HESACECCQPRSTAACPCDSRAKTGRSDRTGSPTPARC 595
HE C P + A ++G+S GSP C
Sbjct: 284 HEELQRRCGPGTAAYSNAVESLRSGKSGGIGSPPQTEC 321
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 579 QRRRAAT-VPPADPDSLSTLNLVTHPTLVPRTQYS 680
+R RA T +PPA PDSL ++ T +P T Y+
Sbjct: 502 ERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYN 536
>08_02_0296 - 15466693-15466878,15467046-15467315
Length = 151
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 512 RSTAACPCDSRAKTGRSDRTGSPTPARCHCAACGPG 619
R T P +R KT +DR P C C G G
Sbjct: 13 RVTPPQPAGARVKTMMTDRNSQPHTVGCVCVCVGVG 48
>03_01_0179 -
1443508-1443624,1443712-1443773,1444904-1444971,
1445811-1445868,1446439-1446629,1447164-1447359,
1448396-1448609
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Frame = +1
Query: 352 HCRSDPHP------DGSPRPVRQQVPHHRLHGVPRLLRLWNYL*QPDRYA--RVCVRVLS 507
HCR+ PHP ++V HH+ PR R + Y + V +LS
Sbjct: 29 HCRASPHPHQQAASTSLAETTEERVAHHKKEADPRRRRPHRTKVIDNLYVDRKTSVMILS 88
Query: 508 AAKYSG 525
KY+G
Sbjct: 89 ILKYTG 94
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +3
Query: 102 YQSACLVDDQLKEPGSTWSSADNCTTFSCDRSGEEVFVTSATEHCPDVSACTR----PTL 269
+Q AC E G + TT C+ +GE VT+ H V + P+
Sbjct: 163 HQLACATHRFFDENGFLYVHTPIITTSDCEGAGEMFQVTTLFSHAEKVEKELKENPAPSE 222
Query: 270 SILPAVRSATRNRKPSVNASLRASRA 347
S + A R + + +V A L+A++A
Sbjct: 223 SDIEAARVVVKEKGDAV-AQLKAAKA 247
>01_01_0757 - 5840736-5842574
Length = 612
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 279 VVLTMSAGCRPTRRGSARWLTSRTPPPRF 193
V T++ R T + RWL+S TPP R+
Sbjct: 490 VTYTVAREYRETAIAAGRWLSSGTPPRRY 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,497,561
Number of Sequences: 37544
Number of extensions: 515433
Number of successful extensions: 2207
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2204
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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