Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00988
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 93 2e-19
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 80 2e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 80 2e-15
07_01_1001 - 8460467-8460799 65 7e-11
07_03_0321 + 16757414-16757743 63 3e-10
01_06_0098 - 26416768-26416998 31 0.78
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 30 1.8
08_02_1093 - 24271826-24273427 30 2.4
12_02_1217 + 27082452-27083593,27085041-27085158 29 3.2
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 4.2
12_01_0140 - 1088400-1088843 29 5.5
11_06_0264 - 21785450-21786928 28 7.3
12_01_0090 + 717524-719080 28 9.6
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 28 9.6
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 9.6
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 93.5 bits (222), Expect = 2e-19
Identities = 41/70 (58%), Positives = 59/70 (84%)
Frame = +3
Query: 45 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 224
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 225 KLSSMPVGGG 254
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 80.2 bits (189), Expect = 2e-15
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = +3
Query: 42 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 221
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 222 EKLSSMPVGGG 254
EK +S+P GGG
Sbjct: 253 EKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/70 (47%), Positives = 53/70 (75%)
Frame = +3
Query: 45 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 224
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 225 KLSSMPVGGG 254
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 64.9 bits (151), Expect = 7e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = +3
Query: 45 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 224
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 225 KLSSMPVG 248
L+ VG
Sbjct: 61 MLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 62.9 bits (146), Expect = 3e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +3
Query: 45 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 224
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 225 KLS 233
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 96 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 194
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 590 VKVPFFTMKQRTRVMHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEEI 769
+K+P K+ T HSG D M+N K D+QL EH I +++EI
Sbjct: 290 IKLPIEATKEYTTKDHSGTDANQPSNMDNTKAQTTDMVDVQLQLKTMNEHLI--ILRKEI 347
Query: 770 RYKQ 781
+ K+
Sbjct: 348 QAKK 351
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 42 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 221
+ R AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 63 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKL 161
Y+LA+ TPA +D E+ VG +ADG+ L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 87 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 212
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 87 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 212
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>11_06_0264 - 21785450-21786928
Length = 492
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 259 RCPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTE 128
R PPP + + S AIS + V FL S +A IPTE
Sbjct: 382 RTPPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
>12_01_0090 + 717524-719080
Length = 518
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 250 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIF 116
PP + S P ++ S+S SS + + + S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 72 AVLGGKTTPAAADVEKILSSVGIEADGEKLK 164
A+L GK TP D+E+ L + G GE++K
Sbjct: 14 ALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 154 SPSASIPTELRIFSTSAAAGVVLPPSTASKYAA 56
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,496
Number of Sequences: 37544
Number of extensions: 269908
Number of successful extensions: 766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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