Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00987
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    27   2.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   6.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.5  

>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 405 TTTPPISAVKHVMRFGLKAGAAVVTKLRP*NLYLNW 512
           T+   I  ++H++R     G+ + TK    NLYLNW
Sbjct: 242 TSRQAIKYLEHILRTNTN-GSKIFTKSPVKNLYLNW 276


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 315  SIECVIRIKQKKLDNFIIGGWTSCKSARV--GTTTPPISA 428
            S+E +IR+ +K+L +F+   W     A+V  GT    I A
Sbjct: 1013 SVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGA 1052


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 384 CKSARVGTTTPPISAVKHVMRFGLKAGAAVVTKLR 488
           C  + +    PP + ++HV  +G  A A V+T  R
Sbjct: 616 CIESLLAFFVPPRTKIEHVSEWGYSAAAKVMTLAR 650


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/83 (19%), Positives = 34/83 (40%)
 Frame = +1

Query: 16   MLNVKINFGIQMCQCFMISRFFLYCSEPKQILKRSIHT*LSFIYFFNFLLPL*ADVHTAH 195
            ++ + +   ++ CQC      FL  SEP+ I+K+ + +  +     ++  P         
Sbjct: 1123 LVQIYLENNVECCQCIWDIFSFLSDSEPQYIVKQLVSSFFAREGIASYAGPSSLTAKITQ 1182

Query: 196  LIVSCYRRPWTSAMPGAEPSAAY 264
            L + C    + S + G   S  +
Sbjct: 1183 LDILCCMSDFVSRVEGENTSKIF 1205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,673
Number of Sequences: 5004
Number of extensions: 57805
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)