Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00984
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 37 0.003
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.2
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 27 3.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.8
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 5.0
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 6.7
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 26 6.7
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 124 IAGTLFLGYCVYFDQQRRKDPLFKKKLRER 213
+ T +GY +YFD +RR DP F+K L+ R
Sbjct: 10 LLATAAVGYAIYFDYKRRNDPHFRKTLKRR 39
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 106 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 186
LG+ +G+ ++F GYC F D++ K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 566 SSNTQFFIRHLLPALRCSSLHR 501
+S+ FF+R+ ++RCSSLH+
Sbjct: 17 NSSLNFFVRNREKSIRCSSLHQ 38
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -2
Query: 739 VVNSLVTYFAKNMFWKIQNHEAIRSASFNIIYE*VYLQKTDKNKTKINYYDHHVLLSSLQ 560
+++ + F N F++ N E A +IY +++ + +NY D L+SL
Sbjct: 43 IIDECIGLFRANCFFR--NFEIKGPADRTLIYGTLFISECLGRVNGLNYRDAERQLNSLA 100
Query: 559 IHNF 548
+ NF
Sbjct: 101 LENF 104
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -2
Query: 745 IFVVNSLVTYFAKNMFWKIQN-HEAIR---SASFNIIYE*VYLQKTDKNKTKINYYDHHV 578
+ +V SL T + H IR S FN + E V + D++ I Y
Sbjct: 963 VLLVTSLKTMLTSKEEINLSTLHTQIRLLLSCLFNQLIEVVTEDQVDESTKGILYEIMST 1022
Query: 577 LLSSLQIHNFLFDIFFLHYVAP 512
L + FLFD+ +LH + P
Sbjct: 1023 LFVFSRAFPFLFDLSYLHLLKP 1044
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 206 ESED*MHNKMLRGLVPWRTCSRHE 277
ES+ + ++ L+PW +CS HE
Sbjct: 14 ESDSSRNQFIINSLLPWYSCSEHE 37
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -2
Query: 697 WKIQNHEAIRSASFNIIYE*VYLQKTDKN-KTKINY--YDHHVLLSSLQIHNFLFDIFFL 527
W++ + ++ + L+K ++N + K NY + H+L +++I +FL
Sbjct: 567 WRLLTNPVLQIQEISDYCHFKLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFL 626
Query: 526 HYVAPRFIEDRRRSETSGSFL-RSRW 452
H+ + D R + G L ++ W
Sbjct: 627 HFSSSYIFNDARERDVYGVKLSKNMW 652
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -1
Query: 464 KKQMEDWSWHSLLKYTKQLFSLSTNSYSLPEMFD---SSFKITCSQQLFAELNLLQEKSL 294
KK+ ++W + LL+ + + S NS L +D + K S++ E++L +
Sbjct: 388 KKERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDR 447
Query: 293 HSFMIVHVWNRSSRVRDL 240
S ++ ++ + + R +L
Sbjct: 448 MSQLLANITSINERKENL 465
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +1
Query: 277 TIMKLCR--DFSCNRFNSAKSCW 339
T+ K+C+ + SC RFN K W
Sbjct: 84 TVQKVCKKLNISCRRFNFEKEYW 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,748
Number of Sequences: 5004
Number of extensions: 58619
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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