Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00984
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0548 + 29896648-29896701,29896818-29897021,29897451-298977...    32   0.43 
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210...    29   4.0  
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368...    29   4.0  
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    28   7.0  
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571...    28   7.0  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   9.2  
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225...    28   9.2  

>02_05_0548 +
           29896648-29896701,29896818-29897021,29897451-29897708,
           29897821-29898036,29898130-29898285,29898396-29898707,
           29898795-29898882,29899055-29899203,29899390-29899722
          Length = 589

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 55  KNDSSRIKKCMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQ- 231
           K    RIK+   I      I   IAGTL +G  V    Q  +D L  +KLRE +L  Q+ 
Sbjct: 110 KKKKERIKELANIQSRIEQIRGEIAGTLEMGQQVAL-PQINEDDLTVRKLREFQLQLQEL 168

Query: 232 NASRSRTLEDLFQ 270
              +SR LE + +
Sbjct: 169 EKEKSRRLEKVLE 181


>08_02_1046 -
           23919990-23920183,23920251-23920479,23920624-23921057,
           23921426-23921567,23922163-23922255,23923132-23923245,
           23924181-23924266,23924458-23924506,23924717-23924783,
           23925550-23925665,23925698-23925821,23926465-23926553,
           23926810-23927061
          Length = 662

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 739 VVNSLVTYFAKNMFWKIQNHEAIRSASFNIIYE*VYLQKTDKNKTKIN 596
           V+ S+V++FA N+ + ++ H   RSA  N      Y+ K+ +   ++N
Sbjct: 458 VIKSIVSFFAINISFPLEGHLVTRSADPNNARRIYYVSKSVQEILQLN 505


>02_05_1157 -
           34533625-34533875,34535279-34536340,34536673-34536837,
           34536993-34537941
          Length = 808

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +1

Query: 49  ACKNDSSRIKKCMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---- 216
           A KND     K     +   G++VG+  ++F+ + +Y   Q+RK    K++  E+     
Sbjct: 352 AIKNDCRPNDKFTLALKIVTGVSVGVFLSVFMCFWLYLGLQKRKLIRTKQRFFEQNGGVI 411

Query: 217 LNAQQNASRSRTLEDLFQT*TIMKLCRDFSCNR 315
           L  Q ++        +F T  + K   +F+ +R
Sbjct: 412 LQQQMHSGGGTGGFKIFSTEELKKATNNFAADR 444


>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 363 VEHLGQAVAVCGQTEQLLSVLQQTMP 440
           +EHL  A+++CGQT  L   L++ +P
Sbjct: 300 MEHLTFALSLCGQTSVLAKHLEEVLP 325


>01_01_0733 -
           5715719-5715785,5715908-5715966,5717844-5717884,
           5718086-5718134,5718427-5718559,5719303-5719384,
           5719990-5720472,5720612-5721024,5721260-5721419,
           5721541-5721665,5721756-5721811,5721831-5721889,
           5722069-5722180,5722952-5723032
          Length = 639

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 191 NSGSLRLCWSKYTQ*PKNSVPAIPTAIPNVVLVISMHFFIRE 66
           N GSL   W + +  PK      PT +P+V +        +E
Sbjct: 305 NGGSLATMWGRASAKPKTPATTNPTVLPSVAVTADAQICAKE 346


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 405  EQLLSVLQQTMPAPIFHLLLKKLPEVSERLRSSMKR 512
            EQL +++    P P++ L+L K     E +R SM R
Sbjct: 4142 EQLCNLICPVKPEPVYLLILNKAHTQEEFIRGSMTR 4177


>08_02_1230 +
           25419533-25420446,25421098-25421279,25422197-25422543,
           25423327-25423557,25423680-25423775,25423934-25424044
          Length = 626

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 326 AELNLLQEKSLHSFMIVHVWNRSSRVRDLEAFCCAFSLRSL 204
           AEL    E S++   +  V+NRSSR   L+   CA + R+L
Sbjct: 284 AELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRNL 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,238
Number of Sequences: 37544
Number of extensions: 352335
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)