Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00983
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992...    32   0.55 
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323...    31   0.73 
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091...    30   2.2  
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724...    29   2.9  
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    29   2.9  
04_04_1050 + 30419673-30419789,30419882-30419977,30420180-304202...    28   9.0  

>03_02_0621 -
           9923163-9923245,9924163-9924338,9924437-9924495,
           9924952-9924984,9925060-9925185
          Length = 158

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 12  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 128
           I S+PT K++ +  +V  Y G R +  L  FV  + E A
Sbjct: 112 IHSYPTFKVFYEGEEVAKYKGPRNVESLKNFVSDEAEKA 150


>05_01_0410 -
           3234455-3234466,3234851-3234950,3235037-3235161,
           3235244-3235400,3235644-3235735,3235828-3235855,
           3235949-3236066,3236411-3236466,3236556-3236653,
           3236864-3236948,3237428-3237600
          Length = 347

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 12  ITSFPTIKLYSKDNQV-HDYNGERTLAGLTKFV 107
           ++ FPT+K + K N+   DY+G R L    KF+
Sbjct: 220 VSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFI 252


>04_03_1011 -
           21708503-21708544,21708689-21708898,21709000-21709112,
           21709232-21709349,21709386-21709412,21709671-21709808,
           21710069-21710194,21710279-21710467,21710598-21710885,
           21710937-21711024,21711120-21711298
          Length = 505

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 12  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV-ETDGEGAEPVPSVTEFEEEEDVPARD 185
           +  +PTI  YS    +  Y+G RT   +  F+ E  G  A    +V E  + + V   D
Sbjct: 435 VEGYPTIYFYSSSGNLLSYDGARTAEEIISFINENRGPKAGAAAAVDEKTQIDAVEEED 493


>03_02_0300 -
           7246312-7246662,7246757-7246831,7246920-7246993,
           7247247-7247334,7247464-7247615,7247702-7247861,
           7247940-7248095,7248181-7248396,7248808-7249065,
           7249816-7250019,7251334-7251423
          Length = 607

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 734 TTNDADVTKDSRTETASKLSSTVRTRSVSIDEADNQFHVYSLSLWSLV 591
           +TN +D T +  TET  KL +  RTR   + E   + H     LW+L+
Sbjct: 228 STNISDSTLEGLTETILKLKAEKRTRVSKLQEIVGKLH----KLWNLM 271


>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  ITSFPTIKLYSKDN-QVHDYNGERTLAGLTKFVETDG 119
           ++ +PTI+ + K + +   Y G+R+   L +FV T+G
Sbjct: 72  VSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVNTEG 108


>04_04_1050 +
           30419673-30419789,30419882-30419977,30420180-30420264,
           30420352-30420386,30420479-30420544,30420646-30420686,
           30420818-30420933,30421101-30421207,30421354-30421491,
           30421610-30421744,30421888-30421998
          Length = 348

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 566 DNLCRTFVQPVTRERESTHETDYPLHLWTRIS 661
           D  CR +V+   R RE+   TDY + L T ++
Sbjct: 289 DKDCRPWVEKYQRSRETVSRTDYEVDLITTLT 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,985
Number of Sequences: 37544
Number of extensions: 321991
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)