Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00980
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658... 34 0.11
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 31 1.0
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 30 1.8
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 29 4.1
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 7.2
02_05_0699 + 31013176-31013345,31013749-31013872,31013950-310140... 28 7.2
02_02_0340 + 9135846-9138377 28 7.2
09_04_0602 - 18892498-18892612,18892756-18892819,18892878-188928... 28 9.6
>12_02_0700 +
22259921-22260207,22264678-22264750,22265062-22265802,
22265849-22266424,22266505-22266957
Length = 709
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 46 VFDEEKIKFIQCLGKELKFLQALNLQNNRHVVTELKMNFSSFMEGLVSKDPPLDDNEYEV 225
V D ++ +C G+EL L +L ++N ++ +LK+N S ++ L ++DN +
Sbjct: 468 VHDSKRSSVRKCAGEELVKL-SLESESNASIILKLKLNDSIVVDRLSEMVVDVEDNTFRT 526
Query: 226 KYQESYRK-AMRHSTSDE 276
+ + + H+T DE
Sbjct: 527 SAADILKHLCINHTTDDE 544
>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 205 DDNEYEVKYQESYRKAMRHSTSDETGLQNFQKMY 306
D+ E ++K+QE Y K +SD L N Q +Y
Sbjct: 1104 DEEEKKIKFQELYEKYKHLQSSDPIALANIQLLY 1137
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 393 LSLSFYVNYMSLFWDPDTCCLHPNDLVNEHNLALEQALN 509
+SL V ++ FW P+T H D+V E ++++E+ L+
Sbjct: 285 ISLLAIVALLASFWLPETLHKHTQDMVLEDSISVEEGLS 323
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 632 VNVYIKKMDKATEFKGWWVPTLGIPYIVNLANRSSYHE 745
V V+ K++D+ G W+ TL I ++ N+S HE
Sbjct: 420 VKVHCKEVDEVVYKIGKWLSTLDIKVLIKRRNQSPKHE 457
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 512 FHPELPDDMEREILKQFIKSKYDDLRELNDAANETAIASAVNVYIKKMDKATEFK 676
F+P+ E + K++++S Y D E + A E ++ Y+ K D AT+ K
Sbjct: 15 FYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQI--PYLSKPDIATKCK 67
>02_05_0699 +
31013176-31013345,31013749-31013872,31013950-31014032,
31014106-31014217,31014297-31014401,31014809-31014859,
31015893-31015979,31016325-31016402,31016477-31016530,
31016608-31016892
Length = 382
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 16 FDSKRQKIPNVFDEEKIKF---IQCLGKELKFLQALNLQNNRHVVTELKMNFSSFMEGLV 186
F+S+ +++ F E ++ +Q + + LK A++ + T L+ + SS
Sbjct: 264 FESEYREVLAKFTEMTSRYAQEMQTIDELLKERNAIHASYTNN--TTLQRSSSSNKGKTS 321
Query: 187 SKDPPLDDNEYEVKYQESYRKAMRHSTSDETGLQNFQK 300
SK+ DD++ K ++S K+M S SD+ G + +K
Sbjct: 322 SKESKSDDDQTVKKEKKSKSKSMEGSRSDDDGPRKEKK 359
>02_02_0340 + 9135846-9138377
Length = 843
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/93 (24%), Positives = 40/93 (43%)
Frame = +3
Query: 276 NRPTEFPEDVFKLSLMQHMPTQFTNLKEINRSKNRKQFMLSLSFYVNYMSLFWDPDTCCL 455
N P FP D FKL ++++ + E++ +F ++N++ L ++ C+
Sbjct: 649 NSPESFPHDFFKLIHLRYLKLKIPYGVELSLPNAISRF-----HHLNFLDL---GNSICI 700
Query: 456 HPNDLVNEHNLALEQALNYFTPNCQMTWREKYL 554
P D+ NL L A N + KYL
Sbjct: 701 LPKDMNRLFNLHLFLARKELCSNIPGIGKMKYL 733
>09_04_0602 -
18892498-18892612,18892756-18892819,18892878-18892884,
18893980-18894153
Length = 119
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = +3
Query: 222 SQVPRKLQKSHETFNQRRNRPTEFPEDVFKLSLMQHMPTQFTNLKEINRSKNRKQFMLSL 401
S P + H + R +RP P KL ++ F ++ + F+
Sbjct: 30 STPPAHARLIHPPHSARTHRPLRLPGTASKLLILF-----FITFRDFRNMISPLDFIRLP 84
Query: 402 SFYVNYMSLFWD 437
FY+ Y+S WD
Sbjct: 85 MFYIYYLSFMWD 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,557
Number of Sequences: 37544
Number of extensions: 345691
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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