Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00979
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.63 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.7  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 543 YGAGYELPADLKTQTEFSTKMVFADARSINDHLYN 647
           YGAGY+L A  K  T  ST  + A    +N+H  N
Sbjct: 78  YGAGYDLAARRKNATRESTATLKA---WLNEHKKN 109


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 378 RRL*CNWKCRCRPQTRRESCWVFAFPCCGP 289
           + L CN K  C+ ++   SC V   P   P
Sbjct: 131 KELFCNGKPDCKDESDENSCTVETDPNRAP 160


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 129 WGVWIQQVLICVVVW 85
           W  W+  + ICV  W
Sbjct: 475 WHTWMPVMRICVSAW 489


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,647
Number of Sequences: 336
Number of extensions: 4226
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)