Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00979
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 29 0.68
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 28 1.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 28 1.2
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 6.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 8.4
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 8.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.4
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 249 TKASYPVKVSHFSFSPVIDVVYQP-STNRYL 160
T+ PVK H+ SPV DV Y P TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 220 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 53
SL ++P N GV LY + G Y V+ D T L + L R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723
Query: 52 V 50
+
Sbjct: 724 M 724
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.2
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 304 ESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSP---GLSTPPKTRRC 474
E+KYPT P+ + + P T A ++ S+S T+P G + R
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTA-----NSSSASISSLHNTTPDGEGKYRSVQNGRA 305
Query: 475 LRIF*KF*RHSNLERELVKRAYTMEPGTNCPQT*RPRRNSAQKWSLPTQGQST 633
L F S+ ++ + ++YT EPG ++ NS + P Q +T
Sbjct: 306 LNYVSSFNSDSHSPKDYISQSYTNEPGLK-KESADSFNNSIDSYISPNQSPNT 357
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 440 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 303
GD+ S PL D P D + + G++ + + D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 463 TRRCLRIF*KF*RHSNLERELVKRA 537
T CLR+ K ++SN+ +E++ R+
Sbjct: 638 TMNCLRVLEKVCKYSNIRKEIIARS 662
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -2
Query: 434 VCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKLFVHIV 255
V +P TD PR +++V++ +V +D N +G L+ +ER++ +
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIG--LNPKSFTDEEREILT--L 451
Query: 254 LRRKPLTLS 228
R P+ LS
Sbjct: 452 FRNPPMRLS 460
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 411 ISKRCAADVARIVNASEDSSLPTDI-LKILTTFKSRA*VGKKGLYYGAGYE 560
+SK C + +V A+ + + L I TT K +G+KGL +GAG +
Sbjct: 426 LSKPCISTGLGLVYATPAARFELNFTLPIATTEKD---IGRKGLQFGAGID 473
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 438 ARIVNASEDSSLPTDILKILTTFKS 512
A +NAS+D +L +D L++L KS
Sbjct: 1213 ASFINASDDIALMSDFLQVLRISKS 1237
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 151 HLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRRSTM*TNSLRSSVRATARESK 312
+L++ + R L+H VDY G+ + LD + R S + +SLRS ++ ++ K
Sbjct: 72 NLLRKTLNRPLLHEVDYHGK-SLEILDMLLQSRNSMI--SSLRSELQEKNQKDK 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,207
Number of Sequences: 5004
Number of extensions: 67617
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -