Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00978
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 34 0.019
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 0.53
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 3.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 27 3.7
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 26 4.9
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 4.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 6.5
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.6
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = -3
Query: 445 ILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTDRNLSSLKVESE 266
+L ++MQ +++E+++ L LKE + + + D + ++++ L D+N SL+ +
Sbjct: 122 LLTNQRSMQTEISESLLHLASVLKENALSFTNALVTDNQVVERTGSLLDKNAHSLRHANH 181
Query: 265 RLQ 257
+Q
Sbjct: 182 GVQ 184
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 472 TTSQEDIDSILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKK 317
T + E + + K H N EKV E L K+L+++ +++K+ E L+K
Sbjct: 292 TITDESSEDLEKLHSNFAEKVKEEQ-ELYKSLEKKRSDLESLLKSRRELLEK 342
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 325 LKKSSDLTDRNLSSLKVESERLQDTVEVPGN 233
+KK + +D + LK E+E LQD + GN
Sbjct: 128 IKKRLEKSDETVCKLKEENENLQDMLRNVGN 158
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 239 WKCWLWIMLAVVMVIFINMVLFMKVMKKRKYEL*MLRYVNIL 114
W + + +++ F ++V+F K+ K KY+ L Y+ I+
Sbjct: 391 WNLFALTLAIIILFAFNDLVIFDKLQKLWKYDDTTLEYLKIV 432
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -3
Query: 502 IIKTPNFTSNTTSQEDIDSILKYHQNMQEKVAENMVMLTKNLK 374
++ TP+F ++ + D IL+Y ++ + V E + +N +
Sbjct: 116 VLDTPHFGEAIDNENNFDIILQYIESQYDNVLEEESRIKRNAR 158
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.9
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = -3
Query: 481 TSNTTSQEDIDSILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADT--EALK---K 317
T N T+ ++ DS K + +++ + K L+ Q AS I DT + L K
Sbjct: 39 TENFTASQNNDSA-KREKRKKQRQKQKERKRAKLLELQDTNASIIQSPDTLSDLLNNYIK 97
Query: 316 S--SDLTDRNLSSLKVESERLQDTV 248
S SDLTD LS +++ ++DT+
Sbjct: 98 SIYSDLTDVELSDKVIKASYIEDTI 122
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 493 TPNFTSNTTSQEDIDSILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKS 314
T N Q++I+S+ + +QE + + +TK EQ LK
Sbjct: 1447 TSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQ--------------LKSE 1492
Query: 313 SDLTDRNLSSLKVESERLQ-DTVEVPG 236
+ T++ L+ K E E LQ + V+ G
Sbjct: 1493 KERTEKELADSKNELEHLQSEAVDADG 1519
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -3
Query: 448 SILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTD 299
SILK Q ++ + L++ +KE S++ I + + +K+S+L D
Sbjct: 1119 SILKDVQELKSLHTKEANQLSERIKEISEMLEQSIATEEKLRRKNSELCD 1168
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = -3
Query: 427 NMQEKVAENMVMLTKNLKEQSQIASTI-------IKADTEALKKSSDLTDRNLSSLKVES 269
+++ VAEN+ M +++EQ+ +S + IK + E + K + L + S + ES
Sbjct: 421 SIRADVAENIEMGINSIREQAAASSEVALAACSGIKHNAEQVNKLNALIQKVYSYITAES 480
Query: 268 ERL 260
E++
Sbjct: 481 EKV 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,100
Number of Sequences: 5004
Number of extensions: 46572
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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