Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00978
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 33 0.24
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 29 3.9
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 3.9
09_04_0527 - 18337968-18338077,18338440-18341212 29 5.1
08_02_1384 + 26599950-26600033,26600307-26600374,26601000-266010... 29 5.1
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.1
05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,210... 28 6.8
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 6.8
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 28 9.0
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 28 9.0
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 28 9.0
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 33.1 bits (72), Expect = 0.24
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = -3
Query: 478 SNTTSQEDIDSILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTD 299
S S DS+ + EKV N+ +T ++ E S+I+S+ +AD A K SS + D
Sbjct: 296 SRKFSSSAADSVPDSQLSELEKVKRNLRKVTNSMAEASKISSS--RAD--ASKVSSSMAD 351
Query: 298 RN-LSSLKVESERLQDTV-EVPGNVGSG 221
+ +SS ++ ++ D+V ++P ++ +G
Sbjct: 352 ASKVSSSTADASKVSDSVAQIPPSLVNG 379
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 207 HS*HDPEPTFPGTSTVSCNLSDSTFSDD 290
+S D P PGT + C+ DSTF D
Sbjct: 389 NSLEDSRPASPGTQALMCDEQDSTFGTD 416
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 219 DPEPTFPGTSTVSCNLSDSTFSDDKLRS 302
D P PGT + C+ D+TF ++ RS
Sbjct: 415 DSRPASPGTQALMCDEMDTTFGNEDYRS 442
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1
Query: 681 TLSTPIEKLEAVQQLSHG 628
TLS P+EKLE V QLS G
Sbjct: 765 TLSNPLEKLELVGQLSEG 782
>08_02_1384 +
26599950-26600033,26600307-26600374,26601000-26601072,
26601299-26601408,26601491-26601595,26601815-26601914,
26601989-26602165
Length = 238
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 442 LKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTDRNLSS 284
++ H+ +QE + + MV L + LKE S ++ + L + + +L+S
Sbjct: 143 IEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEKILDSTERAVEHSLAS 195
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 681 TLSTPIEKLEAVQQLSHGAATMSVDATQEIHQKTVAKYGVELRSELFGLDD 529
T STP+ + +Q+ HGA + + + H KTV + R + F L D
Sbjct: 1525 TCSTPVVNMAKLQEDCHGAIALQLLLKLKRHLKTVYSL-TDARCQAFSLKD 1574
>05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,
2107120-2107645,2107817-2108090,2108197-2109056,
2109201-2109467,2109711-2109974,2110063-2110356,
2110455-2110814
Length = 1276
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 445 ILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTDRNLSSLKVESE 266
I HQ + V E L+ K++ IA I+K D + L L D S+L ESE
Sbjct: 1152 ISSLHQGYETMVGERGAQLSGGQKQRIAIARAIVK-DPKIL-----LLDEATSALDAESE 1205
Query: 265 R-LQDTVE 245
R +QD ++
Sbjct: 1206 RVVQDALD 1213
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = -3
Query: 502 IIKTPNFTSNTTSQEDIDS----ILKYHQNMQEKVAENMVMLTKNLKEQSQIASTIIKAD 335
I+++ T++ +++ S I+ Q ++ + AEN + T L EQ +I ++K
Sbjct: 1114 ILQSETIQELTSASKELSSLQQEIIVLRQTVETQKAENDGLRT--LGEQEKIE--LVKGK 1169
Query: 334 TEALKKSSDLTDRN 293
EAL+K ++L D+N
Sbjct: 1170 DEALQKYNELNDQN 1183
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 460 EDIDSILKYHQNMQEKVAENMVMLTKNLKEQS 365
E+ + ++ H+ +QE + + MV L + LKE S
Sbjct: 224 EEAQAHIEKHRKLQEDLTDEMVELARQLKESS 255
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 430 QNMQEKVAENMVMLTKNLKEQSQIASTIIK-ADTEALKKSSDLTDRNLSSLKVESERLQD 254
+NM + N + K ++S+ I +DT A +SD++D S K + L+
Sbjct: 726 KNMPKNFLSNPPSVDAEAKTTDSVSSSSIDASDTSASIDASDISDITQCSKKSRNSELEY 785
Query: 253 TVEVPGNV 230
+V GNV
Sbjct: 786 IGDVLGNV 793
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 460 EDIDSILKYHQNMQEKVAENMVMLTKNLKEQS 365
E+ + ++ H+ +QE + + MV L + LKE S
Sbjct: 183 EEAQAHIEKHRKLQEDLTDEMVELARQLKESS 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,408
Number of Sequences: 37544
Number of extensions: 270150
Number of successful extensions: 766
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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