Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00978
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 430 QNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTDRNLSSLKVE 272
           Q ++   AE  V ++   KEQ      I    + A K+   L DR + S K+E
Sbjct: 28  QELKALFAEPPVRVSNGGKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSSKIE 80


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 646 STTIARCSYNVS*CNTRNTSKDCC 575
           STTI    YNV     RN  K+ C
Sbjct: 308 STTINPILYNVMSAKYRNAFKETC 331


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 99  HNIV*QYIHVPKHLKFVFSFLHNLHKQDHI 188
           H +   Y HVP++   +   LHN+    ++
Sbjct: 266 HALQLYYPHVPEYSSSIIMELHNIEGTHYV 295


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 99  HNIV*QYIHVPKHLKFVFSFLHNLHKQDHI 188
           H +   Y HVP++   +   LHN+    ++
Sbjct: 281 HALQLYYPHVPEYSSSIIMELHNIEGTHYV 310


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 CRTQSKCLEMLALD 220
           CR  ++C+  LALD
Sbjct: 479 CRCHARCIARLALD 492


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 CRTQSKCLEMLALD 220
           CR  ++C+  LALD
Sbjct: 479 CRCHARCIARLALD 492


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 522 HHYHPTQTVQIL 557
           HH+H TQ++Q L
Sbjct: 353 HHHHQTQSLQHL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,097
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)