Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00976
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    48   2e-06
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    29   0.97 
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.2  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%)
 Frame = -3

Query: 515 SEDALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 345
           S+ ALD+D  +  KIN+  +  L Y Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 222 SKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 751 LNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKL 575
           + ++G+LAG    +D QK   S     +GY +   ++     N    F  S Y +VS  +
Sbjct: 140 VGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDV 199

Query: 574 DCGVSMKWTAGS 539
           + G ++ W A S
Sbjct: 200 EAGGNVTWDAAS 211


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -2

Query: 447 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNSV 268
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS 
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNSD 204

Query: 267 YREST 253
             + T
Sbjct: 205 SSDET 209


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 721 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 581
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -1

Query: 481 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 311
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 302 INTYCYHNQTACIENQQYRRNYVYSARSVQNAIFLS 195
           I+   +H + A + +  Y RN+++S  SV   +F+S
Sbjct: 776 IDDRVFHYKFAFLNDNGYPRNFLHSGFSVGERVFIS 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,819
Number of Sequences: 5004
Number of extensions: 65183
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)