Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00976
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 37 0.015
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 34 0.11
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 0.77
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 29 3.1
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 4.1
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 29 5.4
06_03_0399 - 20403488-20405092 28 7.1
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 9.4
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = -3
Query: 512 EDALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 333
+ ALD ++ A+ NN ++ Q + RP LTLSA +D + + KVG++L L+P
Sbjct: 324 QHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKAS-KVGLSLVLKP 382
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -3
Query: 515 SEDALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELE 336
++ ALD+ ++ A+ NN + Q + RP +T+S +D + + KVG++L L+
Sbjct: 368 TQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSS-KVGLSLVLK 426
Query: 335 P 333
P
Sbjct: 427 P 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = -1
Query: 760 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVS 584
+ V + G FDT F+K N L + + D ++N G S Y KVS
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344
Query: 583 DKLDCGVSMKWTAGSADTLFGVGAK 509
G + + S + G +
Sbjct: 345 KTSAVGAELAHSFSSNENTLTFGTQ 369
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 691 TLLFVYQTGCVHQPANPGSLVLLQV 765
TLLFVYQTG P PG L+LL +
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLLPI 717
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 530 IIRSWSEDALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 390
+ S+ D + + L KI+ ++ +++L PGV LSA +D
Sbjct: 283 VTASFGYDYMLRQCRLRGKIDTNGVVSALLEERLTPGVNFVLSAELD 329
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 598 YQKVSDKLDCGVSMKWTAGSADTLFGVG 515
+QKV D+LDCG+ + T G + +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 763 LAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQK 590
L+ V + GV FDT + F+K N AL + D +LH N ++G S Y
Sbjct: 130 LSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHL 188
Query: 589 V 587
V
Sbjct: 189 V 189
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -1
Query: 760 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVS 584
AA + GW+ GV+ + + +K + + + Y+ D ++ + D G + Y+K +
Sbjct: 439 AAAAKHMGWIRGVYGEMEPYVSKNPRGAY-VNYRDLDLGVNDDGDGGGGVARARYEKAT 496
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 412 LHCLLPSMDRTSMQVA 365
LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,080
Number of Sequences: 37544
Number of extensions: 417698
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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