Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00975
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 70 1e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 9e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 9e-06
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 33 0.018
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 25 3.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.7
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 4.7
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 4.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 24 6.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 24 8.2
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 24 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 70.1 bits (164), Expect = 1e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 343 GSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.6 bits (98), Expect = 9e-06
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESG 74
GSILASL FQ +W+SKQEYDE G
Sbjct: 395 GSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 43.6 bits (98), Expect = 9e-06
Identities = 18/35 (51%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGP---SIVHRKC 98
GSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 398 GSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 32.7 bits (71), Expect = 0.018
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 348 GSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHR 92
GS+LA F +K +Y+E G SI R
Sbjct: 390 GSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 4.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 21 LSTFQQMWISKQEYDESGPSIV 86
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 4.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 3 GSILASL-STFQQMWISKQEYDESG 74
G++LA + + MW+SK E++E G
Sbjct: 354 GAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 264 KTAKQHSVRFT*YAYYNTLQPTLN 193
KT +++ F AYY+ LQP N
Sbjct: 10 KTPNHYTIIFKVVAYYSALQPNQN 33
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 24.2 bits (50), Expect = 6.2
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 GSILASLSTFQQM---WISKQEYDESGPSIVHRK 95
GSI+A S + + +++ +EY + GP+ +H K
Sbjct: 489 GSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 25 LPSNRCGSRNRSTTSLVPPLYTGSAS 102
+P + STT + PPL T S+S
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS 56
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 98 LLSVETLSYDALQQNLKRVAQITL 169
++ VET DAL+++LK ++TL
Sbjct: 293 VIGVETFDADALKKSLKDKKRVTL 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,611
Number of Sequences: 5004
Number of extensions: 23986
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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