Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00975
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 71 2e-13
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 71 3e-13
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 71 3e-13
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 71 4e-13
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 71 4e-13
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 68 3e-12
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 68 3e-12
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 67 3e-12
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 55 1e-08
12_02_1282 + 27528159-27529148,27529549-27529614 50 7e-07
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 44 5e-05
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 33 0.051
07_01_1204 - 11469953-11470618 31 0.36
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 30 0.48
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 28 1.9
04_03_0624 - 18115559-18115725,18115993-18116872 28 2.5
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 27 3.4
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 26 7.7
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 71.3 bits (167), Expect = 2e-13
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 342 GSILASLSTFQQMWISKGEYDESGPSIVHRKCF 374
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 345 GSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 345 GSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 70.5 bits (165), Expect = 4e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 348 GSILASLSTFQQMWISKAEYDESGPAIVHRKCF 380
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 70.5 bits (165), Expect = 4e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 345 GSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 67.7 bits (158), Expect = 3e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct: 345 GSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 344 GSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 67.3 bits (157), Expect = 3e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 344 GSILASLSTFQQMWISKGEYDESGPGIVHMKCF 376
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/47 (65%), Positives = 32/47 (68%), Gaps = 14/47 (29%)
Frame = +3
Query: 3 GSILASLSTFQQ--------------MWISKQEYDESGPSIVHRKCF 101
GSILASLSTFQQ MWISK EYDESGP+IVHRKCF
Sbjct: 345 GSILASLSTFQQVNLTPTLYEVARMQMWISKGEYDESGPAIVHRKCF 391
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 49.6 bits (113), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 12 LASLSTFQQMWISKQEYDESGPSIVHRKCF 101
LA S +MWI+K EYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKMWIAKAEYDESGPSIVHRKCF 351
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
G+ILA + Q ++K +YDE+GPSIVH+KCF
Sbjct: 366 GAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 398
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 33.5 bits (73), Expect = 0.051
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQE 59
GSILASL +FQQMW SK +
Sbjct: 451 GSILASLGSFQQMWFSKAD 469
>07_01_1204 - 11469953-11470618
Length = 221
Score = 30.7 bits (66), Expect = 0.36
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = -1
Query: 134 VGHHNLKSQRLEALPVYNGGTRLVVLLFRDPHLLEGREGGE 12
VGH L++QRL A + GGTRL + L P + GR G E
Sbjct: 179 VGHGGLRAQRLGAQSIGQGGTRLGLAL---PAGIAGRGGLE 216
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
GS+LA F+ M I+K EY+E G R+ F
Sbjct: 396 GSLLAHRPDFESMCITKSEYEEMGSMRCRRRFF 428
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSI 83
GS+LAS + F + +K EY+E G SI
Sbjct: 436 GSVLASTAEFYEACHTKAEYEEYGASI 462
>04_03_0624 - 18115559-18115725,18115993-18116872
Length = 348
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 46 SRNRSTTSLVPPLYTGSASKR*DFKL*CPTAEPQEGGSNYAC 171
S+N ST+S Y G A R D+ + T E +NY+C
Sbjct: 213 SKNYSTSSAFNDYYGGQAPLRVDWAIGNKTCEEARHQANYSC 254
>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 1 VDRSSPPSLPSNRCGSRNRSTTSLVPPL 84
+D S PP LPS GS N + T L+ L
Sbjct: 1241 LDASGPPGLPSLLDGSSNTTATILITAL 1268
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 3 GSILASLSTFQQMWISKQEYDESGPSI 83
GS+ AS F + +K+EY+E G SI
Sbjct: 403 GSVAASNPEFYESCHTKEEYEEHGASI 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,556,067
Number of Sequences: 37544
Number of extensions: 146989
Number of successful extensions: 326
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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