Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00975
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    74   3e-14
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    74   3e-14
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    74   3e-14
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    74   3e-14
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        74   3e-14
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        74   3e-14
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        74   3e-14
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        74   3e-14
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...    74   3e-14
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    74   3e-14
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    74   3e-14
AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    58   2e-09
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    46   8e-06
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    32   0.14 
Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF039044-3|AAG24121.1|  197|Caenorhabditis elegans Hypothetical ...    27   3.9  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 343 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 343 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 300 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKC 98
           GSIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 404 GSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 46.0 bits (104), Expect = 8e-06
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSIVHRKCF 101
           GSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 342 GSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 3   GSILASLSTFQQMWISKQEYDESGPSI 83
           GS+LAS S F Q+  +K EY E GPSI
Sbjct: 388 GSMLASTSEFYQVSHTKAEYMERGPSI 414


>Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical
           protein K07C5.1 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +3

Query: 3   GSILASL--STFQQMWISKQEYDESG 74
           G++LA+L     Q  W+SK+EY+E G
Sbjct: 358 GAVLANLMKDRDQDFWVSKKEYEEGG 383


>AF039044-3|AAG24121.1|  197|Caenorhabditis elegans Hypothetical
           protein F48G7.5 protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 QNLKRVAQITLVIL*INSVFNVGCK 211
           Q + RVA +TL IL +N    +GCK
Sbjct: 32  QMMLRVALLTLAILWVNGEIQLGCK 56


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
          protein Y49F6B.9 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 24 STFQQMWISKQEYDESGPSI 83
          S  +++WISK+   E GPS+
Sbjct: 3  SEARKLWISKRSLSEEGPSV 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,892
Number of Sequences: 27780
Number of extensions: 134735
Number of successful extensions: 274
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)