Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00975
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              36   1e-04
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   3.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 35.9 bits (79), Expect = 1e-04
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   GSILASLSTFQQMWIS 50
           GSILASLSTFQQMWIS
Sbjct: 118 GSILASLSTFQQMWIS 133


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 283 KNLCQKKNGKTT 248
           K  C ++NGKTT
Sbjct: 376 KEKCDRRNGKTT 387


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 30  FQQMWISKQEYDESGPSIVHRK 95
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 188 SVFNVGCKVL*YAYYVKRTECCFAVFFLTK 277
           SV ++ C+V     YV   +CC+  F  T+
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCFNCTQ 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,052
Number of Sequences: 438
Number of extensions: 1796
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)