Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00974
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.74 
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    28   1.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    26   6.9  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   6.9  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   6.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -3

Query: 709 KPSSATVLNVRQMYASMSLIFIQSLTRFESSSVQLLEKYVVTPLLAKPRLVNLGAS 542
           K S+  +LN  Q   S++   I S    E++SV   EK    PL A+P  + LGAS
Sbjct: 4   KVSADVLLNKYQTSISITKNLINSWLGNENTSVSSDEKNDDPPLQARPPRLGLGAS 59


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 177 FSLVVRLSKACELSNSTNLWLFGSKKFDLSSMMIFYVLCVQYFINF*RKTLVN 19
           +S+++ L    E  +  N W FGS+  D + M+      V+Y  N  R TL+N
Sbjct: 151 YSILLALGATKEQIDQANPWFFGSED-DYTRMLEEAGFHVEYVENISRPTLLN 202


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 137 DSSQAFDNLTTNEKLYAHYLS-QAAWNGGLIVLVQTSPESQRYSPCCIESLWLS 295
           D   AF  LT +  +YAHYLS Q   +  LI   + +    +Y P  I ++WL+
Sbjct: 292 DMLTAFRELTQDFPIYAHYLSIQPDVSNDLI--EELNQFQSQYVPEGINTIWLN 343


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 573 ANKGVTTYFSSNCTEEDSNLVNDW 644
           AN+  T  +S +CT+EDS ++  W
Sbjct: 646 ANRNDTHLWSYDCTDEDSAIIGPW 669


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 120 WLFGSKKFDLSSMMIFYVLCVQYFINF*RKTLVN 19
           +LFG  +F   S+ I   +C+QY+    R+  VN
Sbjct: 167 FLFGYLRFGFLSLFIIMAVCIQYYRICDRRVKVN 200


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 704 VISNSFERTTNVRLYEFNFHPIVNE 630
           VIS +  +T  VR+ +  FHP+V +
Sbjct: 9   VISRAMPKTAKVRVAKEKFHPVVKK 33


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 349 FQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELIIKAS 474
           F  F  +    +  S NY+ +GDTK    +P +  E   +A+
Sbjct: 462 FSTFCWHVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAA 503


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 457 LIIKASKAYEKDNTHILSYGKILKMPF 537
           L+ KAS +Y+K   H+ S+ +    PF
Sbjct: 313 LLSKASASYDKQLRHVKSFNQTTSAPF 339


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 144 ELSNSTNLWLFGSKKFDLSSMMIFYVLCVQYFINF*RKTL 25
           E  NS     FG+K+F +    +  V C + FI+  R T+
Sbjct: 555 EFKNSYQKSRFGNKEFTIKHYALDVVYCAEGFIDKNRDTI 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,158
Number of Sequences: 5004
Number of extensions: 69994
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)