Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00973
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.1  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 687 AGSTPSNSCRRYHSL 731
           A STP+NSC  Y  L
Sbjct: 148 ASSTPTNSCMEYQHL 162


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 687 AGSTPSNSCRRYHSL 731
           A STP+NSC  Y  L
Sbjct: 148 ASSTPTNSCMEYQHL 162


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 687 AGSTPSNSCRRYHSL 731
           A STP+NSC  Y  L
Sbjct: 148 ASSTPTNSCMEYQHL 162


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 172 LLQVPELVRSVPPERILALRQQTQFLWDNIFHQLKKSSSQLLRFYWNV 315
           L  V ++    PP+  + LR QT    D    Q +    + +   WN+
Sbjct: 785 LSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILWNI 832


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 403 SPYAASVPRAPGEAFQIR 350
           SPY    P  P EAF ++
Sbjct: 717 SPYMLQSPLTPHEAFDVK 734


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 403 SPYAASVPRAPGEAFQIR 350
           SPY    P  P EAF ++
Sbjct: 609 SPYMLQSPLTPHEAFDVK 626


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,230
Number of Sequences: 336
Number of extensions: 4135
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)