Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00973
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 28 1.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 3.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 5.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 6.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 6.7
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 6.7
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 8.9
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 420 PISSPVLEAPSAPFTSLAPL--PVPSIPQ 500
P++ V EAPS P +AP+ VPS+PQ
Sbjct: 593 PVAPVVPEAPSVPQPPVAPVAPEVPSVPQ 621
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Frame = +1
Query: 67 LAAGCIPVLLSNGWR-LPFDEKIDWRRAVIW------ADERLLLQVPELVRSVPPERILA 225
+A + L++ W+ LP ++++ R ++ +DE +L Q + + +
Sbjct: 66 IALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLVQI 125
Query: 226 LRQQTQFLWDNIFHQLKKSSSQLLRFYWNVFSLIEFQSNEIF 351
L+Q+ W N ++ ++S L N ++ S EIF
Sbjct: 126 LKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIF 167
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 681 ETAGSTPSNSCRRYHSLPGEGVLHDGS 761
+++ PSNSCR Y SLP H+ S
Sbjct: 30 QSSSPLPSNSCREY-SLPSHPSTHNSS 55
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 420 PISSPVLEAPSAPFTSLAPLPVPSIPQMAP 509
P+S PV +P+AP + PVP + AP
Sbjct: 995 PLSKPVSTSPAAPLARVP--PVPKLSSKAP 1022
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 590 IASSEFCEKVVLVWDSERAAPSLKSLSRMAGDSGI 694
I S +CE V W S PS KSL +++G S +
Sbjct: 276 IESGRYCETVG--WVSINGIPSFKSLVKLSGISSL 308
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 410 ITLPYFISCIRSALGSFYQPRPSSCSINTSDGTPHTPGNSFTALLYVQATSPALHKLLAN 589
+T FI I+ +F P + S H N FT YV+ T P +++ +AN
Sbjct: 748 VTSEIFIRSIKHVFRNFLAVVPQ---VLRSHLLSHLLNNLFTVYGYVEPTKPLINENIAN 804
Query: 590 I 592
+
Sbjct: 805 L 805
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 19 IVARGRRLGSYRFLEALAAGCIPVLLSNGWRLPFDEK 129
+V ++ +RFL + I + NG+ +PF+EK
Sbjct: 48 VVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEK 84
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 405 SRSHYPISSPVLEAPSAPFTSLAPLPVPSIPQMAPL 512
SR+++ +SSP++++P + + + V S+P AP+
Sbjct: 376 SRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPV 411
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 244 FLWDNIFHQLKKSSSQLLRFYWNVFSLIEFQSNEIF 351
F+W +I L + L WN S+ E Q N++F
Sbjct: 366 FIWFHIVFVLAAFYTASLLTNWNTTSVYENQKNDVF 401
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +3
Query: 405 SRSHYPISSPVLEAPSAPFTSLAPL-----PVPSIPQMAPL 512
SRSH +SS + +PS P PL VP +P +P+
Sbjct: 45 SRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLPVWSPI 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,846
Number of Sequences: 5004
Number of extensions: 69385
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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