Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00972
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IEH9 Cluster: DEAD box helicase, putative; n=2; Plasm...    37   0.50 
UniRef50_Q8EWR2 Cluster: Putative uncharacterized protein MYPE14...    34   3.5  
UniRef50_A2DNV4 Cluster: 3'5'-cyclic nucleotide phosphodiesteras...    33   6.2  

>UniRef50_Q8IEH9 Cluster: DEAD box helicase, putative; n=2;
           Plasmodium|Rep: DEAD box helicase, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 830

 Score = 36.7 bits (81), Expect = 0.50
 Identities = 27/89 (30%), Positives = 50/89 (56%)
 Frame = -3

Query: 546 ENXXXXX*LGFLLPSQIYNYYIIDLTQKVHLK*R*KEVNTIFNEHSQNLFTILLIKNTYE 367
           EN      +   LPS IY++Y + +T + +   + KE++ I  E  +N   ++LIKN Y 
Sbjct: 599 ENAFQKYIIKVKLPSTIYHFYHL-MTDETYEN-KIKEIHKII-ETFKNQKILILIKNGYS 655

Query: 366 LLLILKYMK*NIIRCIMSLLFGRREITMK 280
           L+ + KY++ N I  +  LL  + +I+++
Sbjct: 656 LIQLKKYLEMNNIFAV--LLHEKLQISLR 682


>UniRef50_Q8EWR2 Cluster: Putative uncharacterized protein MYPE1410;
           n=1; Mycoplasma penetrans|Rep: Putative uncharacterized
           protein MYPE1410 - Mycoplasma penetrans
          Length = 238

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 48  FNSIFLKVNFIFRFTAYNTDCDIFRKYKKYLLSIIFTL*ICPQL 179
           F+S++L +NF + F AY    +  +KY    L+IIF L I   L
Sbjct: 70  FSSVYLWLNFYYWFIAYQKSINNRKKYNMLFLTIIFPLLIIVSL 113


>UniRef50_A2DNV4 Cluster: 3'5'-cyclic nucleotide phosphodiesterase
            family protein; n=1; Trichomonas vaginalis G3|Rep:
            3'5'-cyclic nucleotide phosphodiesterase family protein -
            Trichomonas vaginalis G3
          Length = 1023

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -2

Query: 337  KYYTMYNVTALWTTRNHNETIIKYKMEFVDKYIVGLTQYAQD*GRIKFPDSFQSCGQIYN 158
            K + M     L T   H+ TIIK   E +DK   G   Y+ D  R+K       CG I N
Sbjct: 876  KMWQMLFTLILGTDMFHHYTIIKQFNELLDK---GPLDYSDDQNRLKLMQILLKCGDISN 932

Query: 157  V 155
            V
Sbjct: 933  V 933


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,515,653
Number of Sequences: 1657284
Number of extensions: 10378912
Number of successful extensions: 19633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19611
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)