Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00972
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   3.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   5.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.4  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = +3

Query: 246 LSTNSILYFIIVSL*FLVVQRAVTLYIV*YFISYILVLIIIHMY 377
           ++TN  L ++I+S   L ++ ++ ++   YFI +I +LI + ++
Sbjct: 415 VATNLSLSYLIISFLLLNLKESIHVWKELYFIVHIYILIALAVF 458


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 313 TALWTTRNHNETIIK-YKMEFVDKYIVGLTQ---YAQD*GRIKFPDSFQSCGQ 167
           T   T++ ++ T  K +K   V K I GL     Y QD   +K PDS   C Q
Sbjct: 231 TLFITSKAYSSTCRKEFKRALVKKTIPGLPMVDDYWQDQIMVKIPDSLGECTQ 283


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 87  FTAYNTDCDIFRKYKKYLLSIIFTL*ICPQLWKL 188
           FT +   C I  KY  +   +   L +C +LW L
Sbjct: 234 FTGFFLSCTISTKYVGFFTFLSIGLSVCLELWYL 267


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 635 LKWDHIKMLIATSVHYNCKYFLNLAVKWL 549
           LKW    M I T ++ NC   L+L   W+
Sbjct: 696 LKWKQANMSIITQIYLNCS--LDLRDSWM 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,307
Number of Sequences: 5004
Number of extensions: 50492
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)