Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00971
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    29   0.49 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   7.9  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 610 LVVFGFGKRVH*ECAEVALSNGPARCLLRVHFNNISRLGSSVKCGGNAAIQF--KPLSFR 437
           L V G  K++    ++ A+S+   + +LR H + +  L      G  A +    +    R
Sbjct: 160 LTVCGSSKKIMVYGSDSAISSFKLKAVLRGHLDWVRTLSFKKTSGSTATLASGSQDRYIR 219

Query: 436 AWNILLWSS 410
            WNI LW S
Sbjct: 220 LWNISLWGS 228


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 242 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 141
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 239 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLRAA--STAFKPI 66
           +T+SVP+    + S + + P+++++ S   SGS   S T   T      +    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 65  TPVEPKITT 39
           T   P +++
Sbjct: 319 TTSAPSLSS 327


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 219 DGLMYRVWFENISFDYLDLVFKMFW 145
           D L    WF ++S DY+D + +  W
Sbjct: 21  DSLKKPNWFTDVSIDYVDELIEHLW 45


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 119 RSYVTQQNSQNILKTRSR*SKEMFSNQTRYMRPSKEQTLSSSP 247
           R YV+Q+N     K      +++++ + RY  P K++++S +P
Sbjct: 19  RGYVSQENKVKRRKRLFNAIRKLWNERRRYRMP-KDESISPTP 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,048
Number of Sequences: 5004
Number of extensions: 56622
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)