Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00969
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.7  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   7.0  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   7.0  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   7.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   7.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.3  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 336 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 464
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 486 HFKRLCVSCAWPIAMKTRASMKAQLKPMLKHWPPLVKVNGEPTNQSS 626
           H  R C  C W + +  R ++ A    + K +  L K   +  ++SS
Sbjct: 157 HINRKCEKCGWGLPLLERNTLYAAKASIQKRYERLTKRGVDQAHESS 203


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 599 QWGTDESIFNSILITRSYQQLRQIFAEYE 685
           QWGTD ++  ++  TR+ +Q++  F + E
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEE 410


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 157 IIDVLCRRGIVQRLEIAETFKTNYGKDLISELKVN 261
           +ID   +   V+R+++     TNY K++IS  K N
Sbjct: 173 VIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 408 IRTISAFYEQLYGKSLESDLKGDTSGHFKRLCVSCAW-PIAMKTRASM 548
           ++ + AF+E+   + + S  KGD S  F+ L     + P+ + T+A +
Sbjct: 472 LKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPLKLPTKAQL 519


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 425  ILRTTVRQEPGIGLKRRHVG 484
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 251  SSLIKSLP*LVLKVSAISRRCTMPRRQSTSMI 156
            SSLI S+P L    S+++R     +R STS+I
Sbjct: 968  SSLIDSIPALSPAPSSLARSSVSSQRSSTSII 999


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,850
Number of Sequences: 5004
Number of extensions: 57394
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)