Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00969
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +2

Query: 332 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHIRILRTTVRQEPGIGLKRRHVGTLQEIVRVL 511
           P CC + W+ ++S  R  +++  L YP  I       +  P I +   +    Q++  ++
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSIFRQTDDHQNSPSIFISDDN----QKLTGIV 418

Query: 512 CMANRDENQGI 544
            ++N  E  G+
Sbjct: 419 QISNMTEYNGL 429


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 468 KGDTSGHFKRLCVSCAWP 521
           K    GH++  CV+C+ P
Sbjct: 378 KNPAMGHWQMSCVACSPP 395


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 523  IGHAQDTHNLLKCPDVSPFKSDSRLL 446
            + H  D HNL   P       DS+L+
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSACDSKLI 1492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,350
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)