Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00968X
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 173 RQVGEESPRMEATDGYKERGASSNQVD*RLSTHGGKSLDAEG 48
           R   +E P  E TD        +NQ+   L T    S+ +EG
Sbjct: 603 RTAAQEDPAEETTDALASAEGENNQMPQVLETEAAPSIASEG 644


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 4    GHRPSPMPST*CGPPPSASNDFPPCVLSRQSTWLEDAPRSLYPSVASIR 150
            G  P P PST   P P+ S   PP  +         AP S  PSV++ R
Sbjct: 1206 GVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR 1253


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 364 DTDGRAGP*VKSRTAGDGESYARYFSKGQNPERRNS 257
           DT+G A     S  +G G S +R  SK ++  +R+S
Sbjct: 566 DTEGDAKSPPSSSKSGQGSSLSRRASKHESKHKRDS 601


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 132 IRGLHSRTFLPHLALLARQM*P 197
           IR LHSR FLP L +  R   P
Sbjct: 522 IRQLHSRLFLPQLIMRERLQGP 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,680
Number of Sequences: 5004
Number of extensions: 49031
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)