Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00968X
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752           31   0.69 
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    29   2.1  
02_05_0342 - 28128670-28129101,28129484-28129523,28129846-281299...    29   2.8  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   4.9  
02_04_0468 - 23172561-23174201                                         28   4.9  
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    28   6.5  
02_02_0317 + 8893593-8894207                                           28   6.5  

>02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752
          Length = 248

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 85  SRQSTWLEDAPRSLYPSVASIRGLSSPTWRCWLDRCDRPIA 207
           +R+  WLED P +  P  A +   S   W  W+ R   P A
Sbjct: 122 ARRRKWLEDCPEATSPDEAVVFDTSIIPWWAWMKRFHLPEA 162


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -3

Query: 223 VSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRS-----VGRPPTRWTDDLVRTAGSRW 59
           V    WQ++  + R  +A     V +   + G++      VG     WTD+  +T  S+ 
Sbjct: 679 VQMTNWQYSESLKRFQHALEACGVNKTLIKRGVKEGDTVVVGEMEMVWTDEPSKTRSSKT 738

Query: 58  MRKAEDRIMWKALG 17
           M   +D + W   G
Sbjct: 739 MNSKDDSVRWPEFG 752


>02_05_0342 -
           28128670-28129101,28129484-28129523,28129846-28129958,
           28129998-28130093,28130196-28130327,28130485-28130805
          Length = 377

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +1

Query: 40  GPPPSASNDFPPCVLSRQSTWLEDAPR-SLYPSVASIRGLSSPTWRCWLDRCDRPIATSA 216
           G PPS+    P CV +R + W E     +   S +S R    P    W    D      A
Sbjct: 276 GLPPSSLPPTPFCVTTRCNRWQEHGGEITTGSSSSSCRRRRRPLPSMWASCSDSLFVLGA 335

Query: 217 C*L*ELCRRLWFSSNFFVP 273
             L E C  + F+ N  +P
Sbjct: 336 APLLEGCVGMGFNLNLGLP 354


>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 207  HFSLLTLRAMSSTLVLVEFLRSGFCPLEKYLA*LSPSPA-VRLLTYGPALPSVSRFPRRS 383
            H   L   A SS   +   + S    L   L    P PA VRL +  PALPS    P   
Sbjct: 2567 HDLFLPSNAQSSAAGVAGLIESSSSRLTYALTAPPPQPALVRLPSTAPALPSAPANPSGR 2626

Query: 384  HSGENA 401
            HS +++
Sbjct: 2627 HSYQHS 2632


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 121 SVGRPPTRWTDDLVRTAGSRWMR 53
           ++GR P  W DD       RWMR
Sbjct: 411 AIGRDPASWGDDAAAFRPERWMR 433


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 381 YGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRE 250
           YG  TW L  G    +R + R   R      L D+ R    +RE
Sbjct: 134 YGERTWVLRCGNIDTIRSSLRKEPRTKCYFYLEDEPRQRSFKRE 177


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 196 GHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVRTA----GSRWMRK 50
           G     S +R GR+   WRP  G  +    PT W  D V  A    GSRW R+
Sbjct: 70  GEAGEESGSRCGRR---WRPGGGRDTDPHSPTSWRLDPVGEAGEESGSRWGRR 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,815
Number of Sequences: 37544
Number of extensions: 391987
Number of successful extensions: 1213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)