Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00968X
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    61   5e-10
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    61   5e-10
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    60   9e-10
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    60   1e-09
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    35   0.038
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    32   0.35 

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
 Frame = -3

Query: 253 RTKVDDIALKVSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVRT 74
           ++K+ D  + + + K  WAGH+ R ++ RW   + +W PR   R VGRPP RW D L + 
Sbjct: 108 KSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKE 167

Query: 73  AGSR---------WMRKAEDRIMWKALGKA 11
             +R         W  +A+DR  WKA+ +A
Sbjct: 168 VTTRDAFGQVKQLWSTQAKDRKAWKAVIRA 197



 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = -1

Query: 393 PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDK----IRNEEIRREPK 244
           P   YG+E WT T  L  ++RV   A+ER ++G++L ++    I  EE+R + K
Sbjct: 57  PALTYGSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSK 110


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = -3

Query: 256  TRTKVDDIALKVSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVR 77
            T + V D    V + K  WAGH+ R  + RW   + EWRP    R VGRPP RWTD L +
Sbjct: 971  TMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 1030

Query: 76   TAGSR---------WMRKAEDRIMWKAL 20
               +R         W   A+DR  W A+
Sbjct: 1031 EITTRDADGEVITPWSTIAKDRKQWLAV 1058



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -1

Query: 393  PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRE 250
            P   YG+E WT T  L+ ++R+   ++ER ++GI+L  + R  ++ RE
Sbjct: 921  PALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQ-RERDLHRE 967


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = -3

Query: 256 TRTKVDDIALKVSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVR 77
           T + V D    V + K  WAGH+ R  + RW   + EWRP    R VGRPP RWTD L +
Sbjct: 710 TMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 769

Query: 76  TAGSR---------WMRKAEDRIMWKAL 20
              +R         W   A+DR  W A+
Sbjct: 770 EITTRDADGEVITPWSTIAKDRKQWLAV 797



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -1

Query: 393 PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRE 250
           P   YG+E WT T  L+ ++R+   ++ER ++GI+L  + R  ++ RE
Sbjct: 660 PALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQ-RERDLHRE 706


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = -3

Query: 256  TRTKVDDIALKVSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVR 77
            T + V D    V + K  WAGH+ R  + RW   + EWRP    R VGRPP RWTD L +
Sbjct: 796  TMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 855

Query: 76   TAGSR---------WMRKAEDRIMWKAL 20
               +R         W   A+DR  W A+
Sbjct: 856  EITTRDADGEVITPWSTIAKDRKEWLAV 883



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -1

Query: 393 PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRE 250
           P   YG+E WT T  L+ ++R+   ++ER ++GI+L  + R  ++ RE
Sbjct: 746 PALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQ-RERDLHRE 792


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
 Frame = -3

Query: 223 VSRLKWQWAGHICRASNARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVRTAGSR------ 62
           V + K  WAGH+ R  + RW   + EWRP    R VGRPP RWTD L +   +R      
Sbjct: 333 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEV 392

Query: 61  ---WMRKAEDRIMWKAL 20
              W   A+DR  W A+
Sbjct: 393 ITPWSTIAKDRKEWLAV 409



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -1

Query: 393 PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRE 250
           P   YG+E WT T  L+ ++R+   ++ER ++GI+L  + R  ++ RE
Sbjct: 272 PALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQ-RERDLHRE 318


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = -1

Query: 393 PRYDYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRREPKS 241
           P   YG+E WT T  LA ++RV   A+ER ++G++L ++ R   I RE  S
Sbjct: 694 PALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQ-RKRNIHREEMS 743


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = -3

Query: 124 RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 20
           R VG+PP RWTD L +   +R         W  +A+DR  WKA+
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 205 QWAGHICRASNARWGRKVLEWRP---RMGIRSVGRPPTRWTDDL 83
           ++AGHI R    RW +   EW P   +   R+VG    RW  D+
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,471
Number of Sequences: 27780
Number of extensions: 290743
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)