Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00967
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    31   0.21 
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    30   0.28 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    29   0.64 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   4.5  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    26   4.5  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 110 KISIDLGGYEIYYYYVNFIIHIYFSKYTI 24
           K++ +L   EI+Y   N ++H+ FSKY +
Sbjct: 809 KLTFELAFLEIFYELFNCLLHLQFSKYLV 837


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 164 SHKDSS*DFLYL-YIIYSGQPTDIIFR*IISKNLSKNGLQRFIYIHMSRLLSKVAICAFG 340
           SH DS   F  L  IIY+  P + +FR +   +++ NGL+R    H  R +++     +G
Sbjct: 365 SHADSFTQFNLLDEIIYAEAPVEEVFRVLCLASITTNGLRRKDIDHYRREITQ----TYG 420

Query: 341 QKNIIDMSIQIDLNII 388
             +++     ID  ++
Sbjct: 421 YYHLLTFQALIDAGLL 436


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 214 RSTNRHYFQMNYLKELIKKWSTKIYIH 294
           R+ NR Y  +  LKEL K  ST IY H
Sbjct: 138 RNENRRYAAVLILKELAKNTSTLIYAH 164


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 202 HNILRSTNRHYFQMNYLKELIK 267
           H+I+R+  + YF  ++ KEL+K
Sbjct: 154 HSIIRTPKKSYFPKDHAKELLK 175


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 244 NYLKELIKKWSTKIYIHTYESSIIKGGNLCIWTKK 348
           +YLK L+  +     + T+ SS++KG  + + TKK
Sbjct: 64  SYLKYLLPLYFLASCLLTFWSSVVKGSTVYVATKK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,571
Number of Sequences: 5004
Number of extensions: 56149
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)