Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00967
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014...    28   6.2  

>04_03_0632 +
           18200844-18200970,18201134-18201190,18201370-18201460,
           18201545-18201705,18202176-18202303,18202386-18202523,
           18202966-18203058,18203546-18203704
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 248 ISKNLSKNGLQRFIYIHMSRLLSKVAICAFGQKNIIDMSIQIDLNIIVS 394
           I+  LS NG+ +FIY+     +  V IC   Q N ++ ++      +VS
Sbjct: 197 IALKLSFNGVNQFIYVPTWFFIVVVVICCLVQLNYLNKALDSFNTAVVS 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,295
Number of Sequences: 37544
Number of extensions: 276658
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)