Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00966
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    30   0.33 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   5.4  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   7.1  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   9.4  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 464 WFYNIIFKEPLIFHQITISIYSFDYS*CEHIHIGLGTLQISV*HY 330
           W   +IF    I H   +S YSFDY      ++ +G +Q  + +Y
Sbjct: 203 WIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYY 247


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 459 LQYNI*GTTHFSPNYNFYLFI*LFVMRAHSYRTRNVTNFRLTLQF 325
           L+YNI     F P  + +++  LF+++     T N+   RL   F
Sbjct: 475 LRYNIYQKQEFGPPVSLWVYQALFLIQVFELFTSNLKQHRLAQMF 519


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 466 HLVDC*LRFLSESIFEEKDEAII*NKSQARFVSYLMS 576
           H++   L+F+   +FE++  A++ N  Q+ F++ L +
Sbjct: 110 HVICWILQFIGHGVFEKRKPALLDNLIQSLFIAPLFA 146


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 326 FKTVTSMTLLLLMYFFFWLGTVLVEFV 246
           ++++  +T++L++YF FW    LV F+
Sbjct: 485 YESLRILTVILVVYFLFWHILGLVAFL 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,202
Number of Sequences: 5004
Number of extensions: 47124
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)