Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00966
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    28   5.0  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.7  
AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 RKRHRSETGYHGYRVTHKSRP 216
           R+ H    G+HG+R  H+SRP
Sbjct: 265 RQHHGGPRGHHGHRHHHRSRP 285


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 497 LKNLNQQSTKWWFYNIIFKEPLI-FHQITISIYSF 396
           L +LN+    W +YN  F +PLI  + + IS+ SF
Sbjct: 105 LLSLNRFCATWVWYNTYFDKPLIKLYFLIISLVSF 139


>AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical
           protein Y37D8A.1 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 552 AVRVLFNVVFFLSEYLKKKQSSPNVI 629
           A R +  ++F+++E L+K Q SPN I
Sbjct: 66  ADRTMIYLIFYITECLRKLQKSPNKI 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,923
Number of Sequences: 27780
Number of extensions: 259330
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)