Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00965
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 146 2e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 102 2e-22
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 102 2e-22
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 95 3e-20
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 89 2e-18
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 80 2e-15
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 80 2e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 42 4e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 42 4e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 42 4e-04
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.003
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.13
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.1
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 28 4.9
Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 146 bits (353), Expect = 2e-35
Identities = 70/84 (83%), Positives = 73/84 (86%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 437 EIKKEVSSYIKKIGYNPAAVAFVP 508
EI EVS +IKKIGYNP AV FVP
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVP 192
Score = 102 bits (245), Expect = 2e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 23 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +1
Query: 484 PSCCRFRALSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAIL 639
P F +SG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSII 236
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 162 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSR 257
LWKFET+KYY+TIIDAPGHRDFIKNMITGTS+
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQ 108
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 146 bits (353), Expect = 2e-35
Identities = 70/84 (83%), Positives = 73/84 (86%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 437 EIKKEVSSYIKKIGYNPAAVAFVP 508
EI EVS +IKKIGYNP AV FVP
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVP 192
Score = 102 bits (245), Expect = 2e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 23 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +1
Query: 484 PSCCRFRALSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAIL 639
P F +SG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSII 236
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 162 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSR 257
LWKFET+KYY+TIIDAPGHRDFIKNMITGTS+
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQ 108
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 23 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 99.1 bits (236), Expect = 2e-21
Identities = 63/127 (49%), Positives = 74/127 (58%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R +
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSD 165
Query: 437 EIKKEVSSYIKKIGYNPAAVAFVPFLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENAS 616
I++ + + +P D TETTC C GSRDG + +K L E S
Sbjct: 166 TIQR-----LFHLSQSP---------DSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 617 LKLSMPS 637
+L PS
Sbjct: 212 SRLLTPS 218
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 162 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSR 257
LWKFET+KYY+TIIDAPGHRDFIKNMITGTS+
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQ 108
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 102 bits (245), Expect = 2e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 23 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +1
Query: 484 PSCCRFRALSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAIL 639
P F +SG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+
Sbjct: 151 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSII 202
Score = 73.3 bits (172), Expect(2) = 7e-14
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +2
Query: 374 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVP 508
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVP
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 158
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 162 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSR 257
LWKFET+KYY+TIIDAPGHRDFIKNMITGTS+
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQ 108
Score = 21.0 bits (42), Expect(2) = 7e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 257 ADCAVLIVA 283
ADCAVL+VA
Sbjct: 109 ADCAVLVVA 117
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1
Query: 1 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 135
TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK +
Sbjct: 23 TTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/85 (45%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
AD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+
Sbjct: 211 ADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFK 270
Query: 437 EIKKEVSSYIKKIGYNPAA-VAFVP 508
EI+ +++ +++K+G+NP + +VP
Sbjct: 271 EIEGKLTPFLRKLGFNPKTDITYVP 295
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 7 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREE 141
G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D ERE+
Sbjct: 127 GQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREK 171
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 171 FETSKYYVTIIDAPGHRDFIKNMITGTSR 257
FET K + TI+DAPGH+ F+ NMI G ++
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQ 210
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 329
Query: 437 EIKKEVSSYI-KKIGYNPAAVAFVP 508
EIK +S ++ ++ G++ FVP
Sbjct: 330 EIKNNLSVFLTRQAGFSKP--KFVP 352
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +1
Query: 7 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERE
Sbjct: 188 GHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 231
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 171 FETSKYYVTIIDAPGHRDFIKNMITGTSR 257
FETS + ++DAPGH+DFI NMITGTS+
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQ 271
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 436
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 347
Query: 437 EIKKEVSSYI-KKIGYNPAAVAFVP 508
EIK +S ++ ++ G++ FVP
Sbjct: 348 EIKNNLSVFLTRQAGFSKP--KFVP 370
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +1
Query: 7 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERE
Sbjct: 206 GHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 249
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 171 FETSKYYVTIIDAPGHRDFIKNMITGTSR 257
FETS + ++DAPGH+DFI NMITGTS+
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQ 289
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +3
Query: 168 KFETSKYYVTIIDAPGHRDFIKNMITGTSRL 260
++ET+K + ID PGH D+IKNMITG +++
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQM 136
Score = 35.5 bits (78), Expect = 0.032
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 266 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 439
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 139 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 188
Query: 440 IKKEVSSYIKKIGY 481
++ ++ + + GY
Sbjct: 189 VEMDIREQLNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +3
Query: 168 KFETSKYYVTIIDAPGHRDFIKNMITGTSRL 260
++ET+K + ID PGH D+IKNMITG +++
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQM 137
Score = 35.5 bits (78), Expect = 0.032
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 266 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 439
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 440 IKKEVSSYIKKIGY 481
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +3
Query: 168 KFETSKYYVTIIDAPGHRDFIKNMITGTSRL 260
++ET+K + ID PGH D+IKNMITG +++
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQM 137
Score = 35.5 bits (78), Expect = 0.032
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 266 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 439
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 440 IKKEVSSYIKKIGY 481
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +2
Query: 260 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 439
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 440 IKKEVSSYIKKIGYNPAAVAFV 505
++ E + G+N A +
Sbjct: 182 VEMEARELLSLHGFNGDATPVI 203
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 204 DAPGHRDFIKNMITGTSRL 260
D PGH DFIKNMI GTS++
Sbjct: 114 DCPGHSDFIKNMICGTSQM 132
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +2
Query: 260 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 439
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 440 IKKEVSSYIKKIGYNPAAVAFV 505
++ E + G+N A +
Sbjct: 182 VEMEARELLSLHGFNGDATPVI 203
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 204 DAPGHRDFIKNMITGTSRL 260
D PGH DFIKNMI GTS++
Sbjct: 114 DCPGHSDFIKNMICGTSQM 132
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 393 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 265
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 37 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 37 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 138
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 302 RIHRYRQLR*AQRNQPRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTSSRSAF 123
R H R + N D LDE+ VS ++ DG + E E N + D +++ +
Sbjct: 255 RAHALRHINFILNNGGMSLADFELDELDVSGNVPDG----LTAEEEEDNPNIDLITKTDY 310
Query: 122 SLSNTQAYLK 93
L + Y K
Sbjct: 311 ELRSNSQYKK 320
>Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical
protein K08D8.3 protein.
Length = 479
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 450 KYPHTSRRLATTQLLSLSCPFWMARRQHVGAFNQNALVQGMAGGA*RRQS 599
KYP+ + T QLL PF MA H+ FN V G+ R QS
Sbjct: 133 KYPNVAHD--TVQLLKNDKPFAMAPNTHLTTFNAETTV-GLVAFTLRNQS 179
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 326 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 478
QT EH LLA ++I+ +NK D E + + E K+V +K +G
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMG 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,959
Number of Sequences: 27780
Number of extensions: 331514
Number of successful extensions: 1026
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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