Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00964
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    31   0.16 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    28   1.5  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   2.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.4  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   4.5  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   4.5  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   7.9  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -3

Query: 270 LLSPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGKYFCKILNSDF 115
           ++  +  ++W D  Y+  + W N+    S+S  L +   +  + C I+++DF
Sbjct: 523 IVESTSFLAWKDEAYSLGMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDF 574


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 165 FPSIHSSS*NRSCYSTRRSTHTYYHSTRLHATDLEEEHRLAYWRED 302
           FPS+  ++  R CY   R     +++ +LH   LEE++ +  +  D
Sbjct: 697 FPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVFISD 742


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 35  PLHE*T*TLSCSTIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLK 184
           PLHE     S +   + W        + S +R +  Y P+  W+P YSL+
Sbjct: 26  PLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLR 75


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -3

Query: 300 LLASTQGGVLLLSPSRVVS-WNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGKYFCKILN 124
           L  +TQ  +  L   ++VS +N NR  + VW N++     L          GK++  I+ 
Sbjct: 473 LSTATQVHLFDLQQKKIVSSFNANRVKYVVWSNDNSQAALL----------GKHYVYIVK 522

Query: 123 SDFSGITSVHQCHRV 79
            +   ITS+H+  R+
Sbjct: 523 KNLELITSIHETIRI 537


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 294 ASTQGGVLLLSPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRG-KYFCKILNSD 118
           +S + G + +SPS +  ++D+    N++    CG  S    L IQ   G  YF  +L S+
Sbjct: 187 SSEKHGTIDVSPSLLQEFSDDLARTNIYCEFLCGCWSEEMQLLIQRTYGDHYFSLVLASE 246


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 398 VLLYAPASDSPLQLRAFVQLIKKS*KIQQLEGANSGGYFPKLD 526
           +LL A   D P  +RA  + I K  +    E +++G ++PKL+
Sbjct: 310 LLLDAIVCDPPYGVRAGAKKIAKCSQRPPKESSSTGNHYPKLE 352


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  NYCYSVALMHRRDTRKVRVKNFAEVFPSKFL-DSQVFTQAR 189
           +YCY   ++  +D RK+  +N    FP+    D+Q  T AR
Sbjct: 85  DYCYYKKILKNKDFRKLLNENLHVDFPADLTEDAQRNTVAR 125


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 515  PKLDSLTSSRG--WPPRQSGMQW--QDLNRAAEGLFVTIDEMERWRRNVE 652
            PK+  + S++        SG Q   Q++    EG+ +  D M +WR NV+
Sbjct: 893  PKIIEMASNKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,368
Number of Sequences: 5004
Number of extensions: 66417
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)