Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00964
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844...    30   1.5  
03_01_0608 + 4471738-4472115                                           28   6.2  

>04_04_0020 +
           22182649-22182829,22183900-22183999,22184415-22184491,
           22184718-22184809,22188655-22189767
          Length = 520

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 407 YAPASDSPLQLRAFVQLIKKS*KIQQLEGANSGGYFPKLDSL 532
           YA A  S +Q +  +  +KK  KI++ + A+S  +F +LD L
Sbjct: 213 YAKAPKSDVQCKNRIDTLKKKYKIERAKPASSWQFFGRLDDL 254


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 432 FNCERLCNSLKRVKKFSNW-REPIPE 506
           F CER+C S + +KK   + ++PIPE
Sbjct: 48  FVCERVCTSKRMLKKVGAFSKDPIPE 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,341
Number of Sequences: 37544
Number of extensions: 467417
Number of successful extensions: 1179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)