Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00964
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L02785-1|AAA58443.1| 764|Homo sapiens DRA protein. 31 3.0
BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 2... 31 3.0
BC021975-1|AAH21975.2| 255|Homo sapiens TSEN2 protein protein. 31 5.2
BC019582-1|AAH19582.1| 465|Homo sapiens tRNA splicing endonucle... 31 5.2
BC004211-1|AAH04211.1| 465|Homo sapiens TSEN2 protein protein. 31 5.2
BC004178-1|AAH04178.1| 465|Homo sapiens TSEN2 protein protein. 31 5.2
AK074794-1|BAC11213.1| 439|Homo sapiens protein ( Homo sapiens ... 31 5.2
BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein. 30 6.9
AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated prote... 30 6.9
AY033287-1|AAK57800.1| 120|Homo sapiens immunoglobulin heavy ch... 30 6.9
AY033253-1|AAK57766.1| 118|Homo sapiens immunoglobulin heavy ch... 30 6.9
AK001550-1|BAA91751.1| 709|Homo sapiens protein ( Homo sapiens ... 30 6.9
AJ242978-1|CAB45135.1| 514|Homo sapiens p621 protein. 30 6.9
AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromat... 30 6.9
AJ289256-1|CAB93165.1| 107|Homo sapiens immunoglobulin heavy ch... 30 9.1
AJ289255-1|CAB93164.1| 107|Homo sapiens immunoglobulin heavy ch... 30 9.1
AJ289254-1|CAB93163.1| 106|Homo sapiens immunoglobulin heavy ch... 30 9.1
AJ289253-1|CAB93162.1| 106|Homo sapiens immunoglobulin heavy ch... 30 9.1
>L02785-1|AAA58443.1| 764|Homo sapiens DRA protein.
Length = 764
Score = 31.5 bits (68), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 95 CTDVIPEKSELRILQKYFPLNSWIPKYSLK 184
C P+K++ RI+ FP+ SW+P Y LK
Sbjct: 42 CCSCSPQKAK-RIVLSLFPIASWLPAYRLK 70
>BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 26,
member 3 protein.
Length = 764
Score = 31.5 bits (68), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 95 CTDVIPEKSELRILQKYFPLNSWIPKYSLK 184
C P+K++ RI+ FP+ SW+P Y LK
Sbjct: 42 CCSCSPQKAK-RIVLSLFPIASWLPAYRLK 70
>BC021975-1|AAH21975.2| 255|Homo sapiens TSEN2 protein protein.
Length = 255
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 71 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ 214
TIV LW T V P + YF W+PK LK LL+ +
Sbjct: 114 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRK 161
>BC019582-1|AAH19582.1| 465|Homo sapiens tRNA splicing endonuclease
2 homolog (S. cerevisiae) protein.
Length = 465
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 71 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ 214
TIV LW T V P + YF W+PK LK LL+ +
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRK 371
>BC004211-1|AAH04211.1| 465|Homo sapiens TSEN2 protein protein.
Length = 465
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 71 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ 214
TIV LW T V P + YF W+PK LK LL+ +
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRK 371
>BC004178-1|AAH04178.1| 465|Homo sapiens TSEN2 protein protein.
Length = 465
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 71 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ 214
TIV LW T V P + YF W+PK LK LL+ +
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRK 371
>AK074794-1|BAC11213.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ90313 fis, clone NT2RP2001388, weakly similar to
TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 (EC 3.1.27.9).
).
Length = 439
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 71 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ 214
TIV LW T V P + YF W+PK LK LL+ +
Sbjct: 298 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRK 345
>BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein.
Length = 1105
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 678 LTVPVAIASSTFLLQRSISSMVTNRPSA-ARFRSCHCIPD*RGGHPRDEVKLSSL 517
L VPVA++S LLQ ++VTN+PS F S P G ++ V L SL
Sbjct: 784 LHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPT-VSGLTKNPVSLPSL 837
>AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated protein
protein.
Length = 1270
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 678 LTVPVAIASSTFLLQRSISSMVTNRPSA-ARFRSCHCIPD*RGGHPRDEVKLSSL 517
L VPVA++S LLQ ++VTN+PS F S P G ++ V L SL
Sbjct: 785 LHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPT-VSGLTKNPVSLPSL 838
>AY033287-1|AAK57800.1| 120|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 120
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 267 LSPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQ 91
LSPSR + W Y W+ W ++ SL L I K F +LNS T+V+
Sbjct: 41 LSPSRGLEWLGRAYYWSRWSHDYT--VSLKSRLTIDPDTSKNQFSLLLNSVTPEDTAVYF 98
Query: 90 CHR 82
C R
Sbjct: 99 CAR 101
>AY033253-1|AAK57766.1| 118|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 118
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 267 LSPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQ 91
LSPSR + W Y W+ W ++ SL L I K F +LNS T+V+
Sbjct: 41 LSPSRGLEWLGRAYYWSRWSHDYT--VSLKSRLTIDPDTSKNQFSLLLNSVTPEDTAVYF 98
Query: 90 CHR 82
C R
Sbjct: 99 CAR 101
>AK001550-1|BAA91751.1| 709|Homo sapiens protein ( Homo sapiens
cDNA FLJ10688 fis, clone NT2RP3000320, highly similar to
partial mRNA for putative p621 protein which interacts
with ).
Length = 709
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 678 LTVPVAIASSTFLLQRSISSMVTNRPSA-ARFRSCHCIPD*RGGHPRDEVKLSSL 517
L VPVA++S LLQ ++VTN+PS F S P G ++ V L SL
Sbjct: 224 LHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPT-VSGLTKNPVSLPSL 277
>AJ242978-1|CAB45135.1| 514|Homo sapiens p621 protein.
Length = 514
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 678 LTVPVAIASSTFLLQRSISSMVTNRPSA-ARFRSCHCIPD*RGGHPRDEVKLSSL 517
L VPVA++S LLQ ++VTN+PS F S P G ++ V L SL
Sbjct: 241 LHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPT-VSGLTKNPVSLPSL 294
>AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromatin
associated factor protein.
Length = 1270
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 678 LTVPVAIASSTFLLQRSISSMVTNRPSA-ARFRSCHCIPD*RGGHPRDEVKLSSL 517
L VPVA++S LLQ ++VTN+PS F S P G ++ V L SL
Sbjct: 785 LHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPT-VSGLTKNPVSLPSL 838
>AJ289256-1|CAB93165.1| 107|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 107
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 264 SPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQC 88
SPSR + W Y + W+N+ S+ + I K F LNS T+V+ C
Sbjct: 23 SPSRGLEWLGRTYYRSKWYNDYA--VSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC 80
Query: 87 HRVTI 73
RVTI
Sbjct: 81 ARVTI 85
>AJ289255-1|CAB93164.1| 107|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 107
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 264 SPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQC 88
SPSR + W Y + W+N+ S+ + I K F LNS T+V+ C
Sbjct: 23 SPSRGLEWLGRTYYRSKWYNDYA--VSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC 80
Query: 87 HRVTI 73
RVTI
Sbjct: 81 ARVTI 85
>AJ289254-1|CAB93163.1| 106|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 106
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 264 SPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQC 88
SPSR + W Y + W+N+ S+ + I K F LNS T+V+ C
Sbjct: 23 SPSRGLEWLGRTYYRSKWYNDYA--VSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC 80
Query: 87 HRVTI 73
RVTI
Sbjct: 81 ARVTI 85
>AJ289253-1|CAB93162.1| 106|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 106
Score = 29.9 bits (64), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 264 SPSRVVSWNDNRYAWNVWWNNSCGFTSLSEYLGIQEFRGK-YFCKILNSDFSGITSVHQC 88
SPSR + W Y + W+N+ S+ + I K F LNS T+V+ C
Sbjct: 23 SPSRGLEWLGRTYYRSKWYNDYA--VSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC 80
Query: 87 HRVTI 73
RVTI
Sbjct: 81 ARVTI 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,089,168
Number of Sequences: 237096
Number of extensions: 2461079
Number of successful extensions: 5454
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5454
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -