Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00962
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 104 9e-24
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 103 2e-23
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.2
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 2.9
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 2.9
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 3.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 5.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.0
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 6.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.8
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 8.8
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.8
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 104 bits (249), Expect = 9e-24
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +3
Query: 6 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 185
M V+VKDV+ K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 186 LRHIYIRSPVGVKTVTKIFGG 248
RHIY+R VGV + K++GG
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGG 81
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +2
Query: 254 SNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 406
+ G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 84 NRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 103 bits (246), Expect = 2e-23
Identities = 44/81 (54%), Positives = 59/81 (72%)
Frame = +3
Query: 6 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 185
M V+VKDV+ + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 186 LRHIYIRSPVGVKTVTKIFGG 248
RHIY+R VGV + K++GG
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGG 81
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +2
Query: 254 SNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 406
+ G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 84 NRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 191 SYLHSLTCWSQDCHQDLWWAQSNG 262
S+ + +T + Q CH++LW+ ++ G
Sbjct: 1149 SFQNLVTVFCQSCHKELWYQKNAG 1172
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 191 SYLHSLTCWSQDCHQDLWWAQSNGV 265
SY+HSL W++ Q W ++ GV
Sbjct: 432 SYVHSLDFWARLLSQAAWLSREKGV 456
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 185 PSSYLHSLTCWSQDCHQDLWWAQSNGVTPSHFCRSSGSIARKALQSL 325
P+S L + C+S + N ++P H+C S + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 245 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 135
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 215 WSQDCHQDLWWAQSNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 358
W+ +Q+L +SN + + AL S + LKL E++QD
Sbjct: 383 WNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQD 430
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 121 QLASKSWLRMTLIGSMCVVL 180
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 219 VKTVTKIFG--GRKVMELHLHISAGHQAVLHARLCNRW 326
+ T+ ++F G V +L+L + + H L +R C +W
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 169 CVVLPSFVIFTFAHLLESRL 228
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 8.8
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 139 WLRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGAK*WSYTFTFLQVIRQYC-TQGF 315
WL + LIG MC S V FT ++ L+ ++ VG ++ T L ++ Q +
Sbjct: 180 WLYLILIGRMC----SGVGFTMFLYHKTYLTDKNFVGQNRSTFLAT-LNILAQILGSMAG 234
Query: 316 AIVGGIEA 339
A +GGI A
Sbjct: 235 AFLGGILA 242
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -1
Query: 394 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 302
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,301
Number of Sequences: 5004
Number of extensions: 35506
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -