Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00962
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   101   4e-22
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   101   4e-22
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    27   6.0  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  101 bits (241), Expect = 4e-22
 Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
 Frame = +3

Query: 9   RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 188
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 189 RHIYIRSPVGVKTVTKIFGGRK---VMELHLHISAGH 290
           RH+Y R P G+    K++GG K   V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +2

Query: 260 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 406
           GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 86  GVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  101 bits (241), Expect = 4e-22
 Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
 Frame = +3

Query: 9   RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 188
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 189 RHIYIRSPVGVKTVTKIFGGRK---VMELHLHISAGH 290
           RH+Y R P G+    K++GG K   V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +2

Query: 260 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 406
           GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 86  GVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +3

Query: 108 DLVKTARFKELAPYDPDWFYVRCAAILRH----IYIRSPVGVKTVTKIFGGRKVMELHLH 275
           DL+K   + +  P+D +W  V   A L H    +Y   P G   + ++F  ++     + 
Sbjct: 188 DLLKLRAYIDANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQ 247

Query: 276 ISAGH--QAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVDETLTESL 410
           + A H  + +  A + ++ R  + L+    V+    H   + +T+ L
Sbjct: 248 VLAPHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTDFL 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,894
Number of Sequences: 27780
Number of extensions: 212795
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)