Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00961
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 95 2e-20
11_01_0645 + 5185341-5185568,5185773-5185823 27 2.9
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 27 2.9
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 3.9
12_01_0081 - 657672-657713,657993-658151,658359-658919 27 5.1
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 5.1
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339 27 5.1
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 27 5.1
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 5.1
11_06_0286 + 21945699-21946213,21946255-21947542 26 6.7
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313... 26 8.9
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/81 (50%), Positives = 60/81 (74%)
Frame = +3
Query: 3 AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
A+I R IY+R +GV KI+GGR+RNG P HFC+SSG+I+R LQ L+ + +++
Sbjct: 61 ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120
Query: 183 DGGRILTTQGRRDLDRIAAQV 245
GGR++T+QGRRDLD++A +V
Sbjct: 121 KGGRLITSQGRRDLDQVAGRV 141
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 21 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 137
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +3
Query: 99 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRL 251
SH C S S+ R+ LQS+ EA +L + ++ R Q + DLD +A ++ L
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDL 248
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 189 HRPELSQQASMPPTIAKPCVQYCLMTCRN 103
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
>12_01_0081 - 657672-657713,657993-658151,658359-658919
Length = 253
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 248 TNLGSDSVKVSSTLCGENATTVLNFLN 168
T +G D++ VSS LCG +A L+ ++
Sbjct: 166 TVVGGDTIYVSSKLCGTHAFDTLDLIS 192
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 94 HLHISAGHQAVLHARLCNRW 153
H HI+AG +L +R+ N W
Sbjct: 161 HRHITAGSGTILQSRVANAW 180
>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
Length = 697
Score = 26.6 bits (56), Expect = 5.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 48 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLV--EKVQDGGRILTTQGRRD 221
+T +F +RNG +HF SS A + +LE K V ++ G R+ G
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307
Query: 222 LDRIA 236
LD A
Sbjct: 308 LDMYA 312
>06_03_0203 -
17863130-17863940,17864023-17864341,17864653-17864716,
17864811-17864929,17865515-17865640,17866626-17866632,
17867421-17867562,17867720-17867738,17868082-17868292
Length = 605
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 183 PELSQQASMPPTIAKPCVQYCLMTCRNVK 97
P+L ++ + T P V++C MTCR ++
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 132 RKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAA 239
R AL++L+ + L ++++ DGG +L T+G ++++A
Sbjct: 110 RTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSA 146
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 227 VKVSSTLCGENATTVLNFLNKLQCLQRLQSLAC 129
V +SST ++ VL L KLQC+ RLQ ++C
Sbjct: 478 VTLSSTPLNQDDLEVLAKLPKLQCV-RLQHISC 509
>05_01_0397 -
3129679-3130144,3130655-3131104,3132215-3132273,
3133136-3133305,3134655-3134771,3134980-3135166
Length = 482
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 36 PVGVKTVTKIFGGRKRNG--VTPSHFCRSSGSIAR 134
P G ++ G +R G ++PS+F SGS +R
Sbjct: 300 PFGTTRAARVDGDTQRRGSSISPSYFSNGSGSRSR 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,126,069
Number of Sequences: 37544
Number of extensions: 147164
Number of successful extensions: 434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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