Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00961
         (341 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal prot...   116   8e-27
AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p pro...   116   8e-27
AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal pr...   116   8e-27
AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC...   116   8e-27
AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB...   116   8e-27
AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA...   116   8e-27
AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p pro...   108   2e-24
AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB...   108   2e-24
BT004886-1|AAO45242.1|  955|Drosophila melanogaster GH08693p pro...    28   3.7  
AE014298-1166|AAF46364.1|  955|Drosophila melanogaster CG1387-PA...    28   3.7  

>X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal protein
           S19 protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p
           protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal
           protein S19 protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC,
           isoform C protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB,
           isoform B protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA,
           isoform A protein.
          Length = 156

 Score =  116 bits (279), Expect = 8e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+ILRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  
Sbjct: 58  ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLK 254
           DGGR L++ G+RDLDRIA Q+  K
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIVFK 141


>AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p
           protein.
          Length = 155

 Score =  108 bits (259), Expect = 2e-24
 Identities = 52/94 (55%), Positives = 67/94 (71%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+I+RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    RKALQ+LEA  +VE+  
Sbjct: 58  ASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLKPSSRLSNKSL 284
           DGGR LT QG+R+LDRIA ++  K   R +  S+
Sbjct: 118 DGGRKLTPQGQRNLDRIANKIVAKQRERSAPVSM 151


>AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB
           protein.
          Length = 155

 Score =  108 bits (259), Expect = 2e-24
 Identities = 52/94 (55%), Positives = 67/94 (71%)
 Frame = +3

Query: 3   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 182
           A+I+RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    RKALQ+LEA  +VE+  
Sbjct: 58  ASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHP 117

Query: 183 DGGRILTTQGRRDLDRIAAQVRLKPSSRLSNKSL 284
           DGGR LT QG+R+LDRIA ++  K   R +  S+
Sbjct: 118 DGGRKLTPQGQRNLDRIANKIVAKQRERSAPVSM 151


>BT004886-1|AAO45242.1|  955|Drosophila melanogaster GH08693p
           protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
 Frame = +3

Query: 45  VKTVTKIFGGRKRNGVTP------SHFCRS--SGSIARKALQSL-EALKLVEKVQ--DGG 191
           +  +TK+ GGRKR+G+ P      S   R+    S  R   Q+L + +K  E +Q  DG 
Sbjct: 246 ISVLTKLDGGRKRSGLGPLGTGNDSTTTRNGQQPSEMRHRFQTLGDRIKQFEYIQFADGP 305

Query: 192 RILTTQGRRDLDRIAAQVRLKPSSRLSNKS 281
                  R +   I A +R  P SR+   S
Sbjct: 306 VATYAFNRNEQRPINASIRDSPRSRIEKSS 335


>AE014298-1166|AAF46364.1|  955|Drosophila melanogaster CG1387-PA
           protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
 Frame = +3

Query: 45  VKTVTKIFGGRKRNGVTP------SHFCRS--SGSIARKALQSL-EALKLVEKVQ--DGG 191
           +  +TK+ GGRKR+G+ P      S   R+    S  R   Q+L + +K  E +Q  DG 
Sbjct: 246 ISVLTKLDGGRKRSGLGPLGTGNDSTTTRNGQQPSEMRHRFQTLGDRIKQFEYIQFADGP 305

Query: 192 RILTTQGRRDLDRIAAQVRLKPSSRLSNKS 281
                  R +   I A +R  P SR+   S
Sbjct: 306 VATYAFNRNEQRPINASIRDSPRSRIEKSS 335


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,964
Number of Sequences: 53049
Number of extensions: 249838
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)