Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00960
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.0  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.0  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 451 IIKCLEKSRTLNCLIIEIISYVSQPIICYQYYSYIACM 564
           ++K L+    +    IE  S  S+P++ YQ+ S+++ +
Sbjct: 280 VLKILKACPDITASFIERNSLTSEPVLSYQWISFVSLL 317


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -1

Query: 742  NTSHIYLKMEK-IFTINVIDLFT*LHLKLRGQFVKKLTMF*MHHSKN---FLNNITCNFH 575
            N ++++ +  + I++IN   L++ +  +   +F   LT   + HS N    L        
Sbjct: 801  NIANLFFQATQVIYSINSTSLYSSIKKEASSRFRFNLTDD-LLHSLNPICILRGTCLRLG 859

Query: 574  IHLSCKQYMNNTDNK**AEKH 512
            I +SCK Y +N  +    E+H
Sbjct: 860  IQISCKDYFSNKSDDKICEEH 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,992
Number of Sequences: 5004
Number of extensions: 60825
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)