Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00960
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine re...    29   2.8  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical...    28   6.4  

>AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein21 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 460 CLEKSRTLNCLIIEIISYVSQPIICYQYYSYIACMTNVCENYR 588
           CLE       ++   I ++S PI C   YS I   +NV   YR
Sbjct: 3   CLEPPPATFRILSHSIHFISIPIYCLALYSLIFIKSNVFTTYR 45


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 421 KKWYSLKCVSIIKCLEKSRTLNCL-IIEIISYVSQPIICYQYYSY 552
           KK+++LK ++  +C+EK    N +  + ++S +S P I   +Y++
Sbjct: 51  KKYFALKYMNKRRCIEKGVAANVIRELTLLSKMSHPFIVNLWYTF 95


>AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical
           protein T12B5.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 409 GVALKKWYSLKCVSIIKCLEK-SRTLNCLIIEIISYV 516
           G  L KW  +KCV  +  +E  S TL+ L  EII +V
Sbjct: 17  GKELDKWIEMKCVRFMSGIEPFSPTLSDLPTEIIHHV 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,207
Number of Sequences: 27780
Number of extensions: 334047
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)